PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02637.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 927aa MW: 98371.2 Da PI: 10.7434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02637.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	485	507	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zmw_sc02637.1.g00050.1.am.mk 485 FVCEVCNKGFQREQNLQLHRRGH 507 89*******************88 PP
2	zf-C2H2	12.4	0.00049	561	583	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Zmw_sc02637.1.g00050.1.am.mk 561 WKCDKCNKRYAVQSDWKAHSKTC 583 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.75E-7	484	507	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	484	507	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.5E-5	485	507	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	485	507	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	485	507	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	487	507	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	526	556	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-5	549	582	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.75E-7	556	581	No hit	No description
SMART	SM00355	110	561	581	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MLATRPEHQS IQPSKAGDHR TPSTPLLVVT QPSKSHAIAS PPCAYQHTLQ TPPGSPHGRE 60 RGEPFPPFSP GFLRGSAAAA VRSATDGRRS AYTHTSRWGP QNIFLVRPSP PARDLLAPPE 120 VAPTRPRGPX XXXHFHRSRP VSSGALPQQP SDPQRTVAGR RTRIRQGGAR RIFSLCDPLP 180 PRATCWPHLK WPPHALVGRA TVSSTCRSLS AVSLFSAAAD AAAAYIRRRA GSACNHSQHY 240 SLRPEIILDS KAAEQGRGKQ QQGRASSRPS CSLAPRVNRS ITRRRLSLGF SNRSSRLGWC 300 ARLFFSLFPC VCWFVSSDSI PRGIILSGAV VPGCLSSFSP ASSPTCLARR RPDRIDLAED 360 AGSEADRRTV RTMSSPLRDS DCSGKGRSYG GQASASGRVF VCFLGMAAAS SAAFFGLGDT 420 QMQPQAAASS LQQQQNSAAA PGAAAGGAQP KKKRNQPGNP RKSSLYPDAE VIALSPRTLL 480 ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKNPKE VRRKVYLCPE PTCVHHDPSR 540 ALGDLTGIKK HYCRKHGEKK WKCDKCNKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD 600 SFITHRAFCD ALARESAQLP HLGAGLYVGT GSMALGVSGA APQMSAVFGN QSQSSSAAAA 660 AQLDHMITSP SSSSMFRSQA SASSSSFFLG GGGGGPSPAD QDFSEDGDHS QGSQSSLLHG 720 KTAAAFHGLM QLPEQNQQGS NANSNLLNLG FFSNNSGGAA GGQDARLVLQ DQFNGGGGGN 780 RNAEQRSMMA SVESHLSGNF SSLYNSSGSA STGLTQNSAT ALLLKAAQMG SSTSSNNNST 840 SALLRAAGFG ANAQQGNRAA AEGSAAHETP FHDLIMNSLA RGSGGFSGGT AGLDDDKLST 900 RDFLGVGRGS MAPLGLHIGA LDPAQMK

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MLATRPEHQS IQPSKAGDHR TPSTPLLVVT QPSKSHAIAS PPCAYQHTLQ TPPGSPHGRE  60
RGEPFPPFSP GFLRGSAAAA VRSATDGRRS AYTHTSRWGP QNIFLVRPSP PARDLLAPPE  120
VAPTRPRGPX XXXHFHRSRP VSSGALPQQP SDPQRTVAGR RTRIRQGGAR RIFSLCDPLP  180
PRATCWPHLK WPPHALVGRA TVSSTCRSLS AVSLFSAAAD AAAAYIRRRA GSACNHSQHY  240
SLRPEIILDS KAAEQGRGKQ QQGRASSRPS CSLAPRVNRS ITRRRLSLGF SNRSSRLGWC  300
ARLFFSLFPC VCWFVSSDSI PRGIILSGAV VPGCLSSFSP ASSPTCLARR RPDRIDLAED  360
AGSEADRRTV RTMSSPLRDS DCSGKGRSYG GQASASGRVF VCFLGMAAAS SAAFFGLGDT  420
QMQPQAAASS LQQQQNSAAA PGAAAGGAQP KKKRNQPGNP RKSSLYPDAE VIALSPRTLL  480
ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKNPKE VRRKVYLCPE PTCVHHDPSR  540
ALGDLTGIKK HYCRKHGEKK WKCDKCNKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD  600
SFITHRAFCD ALARESAQLP HLGAGLYVGT GSMALGVSGA APQMSAVFGN QSQSSSAAAA  660
AQLDHMITSP SSSSMFRSQA SASSSSFFLG GGGGGPSPAD QDFSEDGDHS QGSQSSLLHG  720
KTAAAFHGLM QLPEQNQQGS NANSNLLNLG FFSNNSGGAA GGQDARLVLQ DQFNGGGGGN  780
RNAEQRSMMA SVESHLSGNF SSLYNSSGSA STGLTQNSAT ALLLKAAQMG SSTSSNNNST  840
SALLRAAGFG ANAQQGNRAA AEGSAAHETP FHDLIMNSLA RGSGGFSGGT AGLDDDKLST  900
RDFLGVGRGS MAPLGLHIGA LDPAQMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	557	622	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-32	557	622	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462813.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_021309955.1	0.0	protein indeterminate-domain 5, chloroplastic
TrEMBL	C5X7R9	0.0	C5X7R9_SORBI; Uncharacterized protein
STRING	Sb02g032400.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320