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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02636.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 431aa MW: 46237.6 Da PI: 10.4698 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.4 | 1.8e-39 | 192 | 251 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ Zmw_sc02636.1.g00060.1.am.mk 192 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRT 251 7899******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 190 | 250 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.9E-33 | 193 | 250 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.227 | 196 | 250 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 198 | 234 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MRASGGGRAG PKEPNQKPTR TGEGDGHGGP RMQARTTLLL RYASTATYIG ITRHAAAPLD 60 RSTRGANLFR PFLFTSPLHP RRRPHRTPTT TTTTSSASFR LAASSLQFFS SAPKSISLNI 120 RRRIEHRLTT KVDRSMMAGA PPMHICMDSD WFKGIVPEEP GMGSSSPSTE LIACPRQMHP 180 AAAADRRLRP QHDQPLKCPR CESTHTKFCY YNNYSLSQPR YFCKTCRRYW TKGGSLRNVP 240 VGGGCRKNKR TGAKKPAAPQ LQAHARHMAE TGLHLSFSSS GMQQLLPPPA AADPLCSLGL 300 LDWKYDPILM GSAGGAAALE GASSEAHFTG PGMMGMPGVG GECHALSALR YAAGLGDHLQ 360 APPPPFGSSR AEHNGVEVKP AAAERLLSLE WYGAEASRAP ESTISSFGAL GLWSGMLGGA 420 HQQHHGSSTA I |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953626.1 | 1e-164 | dof zinc finger protein 1 | ||||
TrEMBL | K3YUL6 | 1e-163 | K3YUL6_SETIT; Uncharacterized protein | ||||
STRING | Si017962m | 1e-164 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |