PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02594.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 663aa MW: 73255.7 Da PI: 6.3645

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02594.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.5	2.5e-40	40	143	7	128
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 FhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp d+ky++g+r+nratksgyWkatg Zmw_sc02594.1.g00030.1.am.mk 40 FHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLP----------------DRKYPNGSRTNRATKSGYWKATG 103 **********************.99**********9................789**************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Zmw_sc02594.1.g00030.1.am.mk 104 KDRNVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 143 **9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.966	34	166	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-50	39	166	IPR003441	NAC domain
Pfam	PF02365	4.4E-21	40	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MQLAHASRPG KIYMGARSLP FWFPSLSIEL LPPASAISWF HPTDEELIIY YLKRKINGRQ 60 IELEIIPEVD LYKCEPWDLP DRKYPNGSRT NRATKSGYWK ATGKDRNVNS HRRAVGMKKT 120 LVYYRGRAPH GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIMEHYGAV 180 QHPIEQPQWT ACNVDHRSPT LDLSCDVRGD DFESTSFSFP AEAPMDYTHG GFGMQMSASH 240 EDGKWMQFLS EDAFNATNNP FFTNPASSSF SCIPSKVDVA LECARLQHRL SLPPLEVEDF 300 PHGVSLDTKA GVLRSNPNEV DILQEFLSVA SASQELINGS SSSYAAEMWP GAGSSNVSTH 360 YGNELSSLVE LGVKAKVEAD NFYHIEGCVG TSSSGFALKS GHVDEPVRLV EISEMEEELK 420 EEKKQVENLR GVRLHNNDLG EIAGEAGHLT DPTDADGGLD TAPIFSQSQP DDFAIGFDDV 480 DNPSASFELY EKVDVKHAGL FVSRVGAAKT FFHRVEPSKK VSFHLSPVAS DVSKAIEKFH 540 FPVNVTTKVS GRVSIFSKFK ALIRDKFLMK PSYQRSIGSK EAAAGSELLN IVTLLLTPKE 600 ATGPAAEQEL VMRKVMKPGS CCDGNTVWLP LSKGSKGISS MFLSGKWAFL TSALAIRSPG 660 CNH

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MQLAHASRPG KIYMGARSLP FWFPSLSIEL LPPASAISWF HPTDEELIIY YLKRKINGRQ  60
IELEIIPEVD LYKCEPWDLP DRKYPNGSRT NRATKSGYWK ATGKDRNVNS HRRAVGMKKT  120
LVYYRGRAPH GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIMEHYGAV  180
QHPIEQPQWT ACNVDHRSPT LDLSCDVRGD DFESTSFSFP AEAPMDYTHG GFGMQMSASH  240
EDGKWMQFLS EDAFNATNNP FFTNPASSSF SCIPSKVDVA LECARLQHRL SLPPLEVEDF  300
PHGVSLDTKA GVLRSNPNEV DILQEFLSVA SASQELINGS SSSYAAEMWP GAGSSNVSTH  360
YGNELSSLVE LGVKAKVEAD NFYHIEGCVG TSSSGFALKS GHVDEPVRLV EISEMEEELK  420
EEKKQVENLR GVRLHNNDLG EIAGEAGHLT DPTDADGGLD TAPIFSQSQP DDFAIGFDDV  480
DNPSASFELY EKVDVKHAGL FVSRVGAAKT FFHRVEPSKK VSFHLSPVAS DVSKAIEKFH  540
FPVNVTTKVS GRVSIFSKFK ALIRDKFLMK PSYQRSIGSK EAAAGSELLN IVTLLLTPKE  600
ATGPAAEQEL VMRKVMKPGS CCDGNTVWLP LSKGSKGISS MFLSGKWAFL TSALAIRSPG  660
CNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-39	31	172	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-39	31	172	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-39	31	172	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-39	31	172	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-39	31	172	17	171	NAC domain-containing protein 19
4dul_B	1e-39	31	172	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468623.1	0.0	uncharacterized protein LOC8085734
TrEMBL	K4A6N6	0.0	K4A6N6_SETIT; Uncharacterized protein
STRING	Si034541m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51