PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02590.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 373aa    MW: 39647.1 Da    PI: 6.6247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02590.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.9e-17316357344
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                                   ien++ rq  + kRr+++l KA+EL vLCd+ vav+++s+  
  Zmw_sc02590.1.g00090.1.am.mk 316 IENERSRQAALRKRRATLLQKAKELAVLCDVAVAVVVYSNGE 357
                                   9**************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-23306365IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.525306355IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-19306366IPR002100Transcription factor, MADS-box
CDDcd001205.37E-23307365No hitNo description
PRINTSPR004042.8E-12308328IPR002100Transcription factor, MADS-box
PfamPF003193.4E-16316358IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-12328343IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-12343364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDIEAFLRHR VAKAVKMLEG LKLGNRDRET ELLLNEISLC RRHSLDDLPP ELASSVRSAW  60
LTRMEVIVRC IKSRASSQAA PAPPTLPPPP SYAAIPAALE DGLVAHPLEI MAPALVADAP  120
AAPVVELAPV VADAPELVVA PPLEVAPTDA PAPVVASPLD APPAVPEPTP LLPGELDSGP  180
RYGSYLMEMV SAIMDDGSGS DVVPTPADVL RVLTEHGLLG MFKPPQPGSD SCRVFLPIDR  240
AASTKARSCL FRGSRDPIHT CARCDGSFGS IAGPLASPAI KHGLLLRPPP TNHQNLLDGV  300
PKVPAMTRGK VKIQWIENER SRQAALRKRR ATLLQKAKEL AVLCDVAVAV VVYSNGEPVP  360
ETFPSAAQTK EIL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2226422