PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02556.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 325aa    MW: 35255.8 Da    PI: 4.3933
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02556.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1893142255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++GVr+++ +g+W+AeIrdp+    +  r++lg++ +ae Aa+a++ a++ l+g
  Zmw_sc02556.1.g00180.1.sm.mk  93 QFRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTYPSAEAAARAYDVAARDLRG 142
                                   59*******.**********75....44***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.27E-2092152No hitNo description
SuperFamilySSF541716.54E-2293151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-3193151IPR001471AP2/ERF domain
PROSITE profilePS5103224.84393150IPR001471AP2/ERF domain
SMARTSM003803.6E-3893156IPR001471AP2/ERF domain
PRINTSPR003679.9E-1394105IPR001471AP2/ERF domain
PfamPF008474.2E-1294142IPR001471AP2/ERF domain
PRINTSPR003679.9E-13132152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MCGGAILTEL IPSAPARRVM AGHLWPAAAG EGKRQRRKAD DFEAAFRDFD DDSEEDDQMV  60
DGEEEVESKP FVLPAPSDRP AARHVARRRK PAQFRGVRRR PWGKWAAEIR DPVKGVRVWL  120
GTYPSAEAAA RAYDVAARDL RGSRAKLNFP ETSSPAAAPA SRKRTRAVPT ALVIDLVDEG  180
EDRAGSVKHE AEANQSSDEY GYALPDFSWQ GVSALDLTVA RPVLNVEGDE QPSTDLGKRM  240
RTEEPAAERA DSEASPASTE SESDALFDAF LLGDQFPFFG GGGAYESLDS LFSADAVQGS  300
NAAADEGIGL WSFDDDCLFV DNLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1990150263ATERF1
3gcc_A4e-1990150263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799RRKPAQFRGVRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-109ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3L6SDZ01e-109A0A3L6SDZ0_PANMI; Uncharacterized protein
STRINGSi036118m1e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654