PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02555.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 458aa MW: 48654.4 Da PI: 8.3603 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 100 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a++ ++g Zmw_sc02555.1.g00130.1.am.mk 100 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDIAARVMRG 149 69*******.**********84....35999********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.88E-27 | 99 | 159 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-21 | 100 | 158 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-9 | 100 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-30 | 100 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 100 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.787 | 100 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0010084 | Biological Process | specification of organ axis polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSRRPGSSLS SLSISSAPTP RRSPNIQSFA KSCNTGHRPS RDIHLDRPVS LRNDPHPVMD 60 DTAADAHLYG HTHAHNHRSR RSSHAGAVDE DGDVSPKMAR YRGVRRRPWG RFAAEIRDPM 120 SKERRWLGTF DTAEQAACAY DIAARVMRGN KARTNFPVQA TAGCWPWGPS RVAAPDHMLS 180 PFILHNLLMS SSHPGGCRLL QHAAQGHANV ASATNRPPPV PPPRPCSTVS SPSGTVTTPA 240 GAVTSSVASP LGAQLDDDDD DDVWGSLLQG DPPGAGLLQD ALHDFYPSTR PRGTSRKPGA 300 DAIVRARTKQ DWNEAFRTAS TYGGDDVDED GDYPLMPQGL LGDMIQVPSF VDFHGRAVSS 360 LVPRPTDLMD PARTLQPSHA TLLDPATGVH HILLHAGVDS AAAGCTGVNF LSPGNAARTT 420 KLVLGAKEPS SRIPPVPANC SPCVHGPRAL GCGSGTAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-19 | 101 | 163 | 6 | 69 | ATERF1 |
3gcc_A | 7e-19 | 101 | 163 | 6 | 69 | ATERF1 |
5wx9_A | 1e-18 | 94 | 163 | 8 | 78 | Ethylene-responsive transcription factor ERF096 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955046.1 | 2e-87 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | K3YYH5 | 4e-86 | K3YYH5_SETIT; Uncharacterized protein | ||||
STRING | Si019328m | 7e-87 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7263 | 30 | 50 |