PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02549.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 350aa MW: 38486.8 Da PI: 11.8284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02549.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8.1e-06	276	316	15	54
HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 +i + +++L+ llP +s + +s+ s L++++ YIksL Zmw_sc02549.1.g00100.1.am.mk 276 EISELISKLQALLPASSrRRGSGQASTTKLLKETCSYIKSL 316 68999********555999999**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.835	261	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-6	275	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-6	276	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW 60 ATRPPQAAAV VPVPRSIERA KHAYNHQLLE ASAPGPSPSC IAQRASVVAA SRSHARARLP 120 RSSRRHRANM FARERDGAGE RNARIGAQAL APRCPVGALY VTRPTWQRRR GSTSTPRDWR 180 AFGRRGGQLD VTLIGAYIVA LYCCTPLPFC LPHNTLLQPS KKSDLERLTG PLFPPRTLLP 240 VRERDHSLSA AGEAKHDETS RMSGRRSSRG NISDEEISEL ISKLQALLPA SSRRRGSGQA 300 STTKLLKETC SYIKSLHREV DDLSDRLSDL MSTMDHNSPG AEIIRSILRS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW  60
ATRPPQAAAV VPVPRSIERA KHAYNHQLLE ASAPGPSPSC IAQRASVVAA SRSHARARLP  120
RSSRRHRANM FARERDGAGE RNARIGAQAL APRCPVGALY VTRPTWQRRR GSTSTPRDWR  180
AFGRRGGQLD VTLIGAYIVA LYCCTPLPFC LPHNTLLQPS KKSDLERLTG PLFPPRTLLP  240
VRERDHSLSA AGEAKHDETS RMSGRRSSRG NISDEEISEL ISKLQALLPA SSRRRGSGQA  300
STTKLLKETC SYIKSLHREV DDLSDRLSDL MSTMDHNSPG AEIIRSILRS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33989	3	4