PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02532.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 629aa MW: 68327.4 Da PI: 8.6253

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02532.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41	4.5e-13	377	451	1	46
TSSS-HHHHHHHHHHHHHTTTT..............................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................tWktIartmgkgRtlkqcksrwqk 46 +g W++eEde+l++ + ++G g W+ Ia++++ gRt++++k++w++ Zmw_sc02532.1.g00130.1.am.mk 377 KGLWSPEEDEKLYNHIILYGVGcwssvpklagmhcysslgsgdarmpslariMWSQIASHLP-GRTDNEIKNFWNS 451 678*********************************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.168	372	457	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-9	372	406	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-13	376	455	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.63E-11	377	454	IPR009057	Homeodomain-like
Pfam	PF00249	9.0E-6	377	408	IPR001005	SANT/Myb domain
CDD	cd00167	9.12E-10	380	450	No hit	No description
Pfam	PF00249	1.0E-5	429	452	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-11	430	454	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MPSPTTVRVG STSRHVDRTV TLDSCKVDLC RSVLSFCRAA ACTGDPPRIK LYAKANKFGN 60 ICTGRRVTDC FRVELALDVT ERAREAAGQI ARDMRQALDA APAPSSFCNR DCARFGLHGL 120 RKRRFPLRLL SLAKHSSIMQ VTRARQVRVT PFCDDNNGLL LSSLSSPPPP RRRSGNGRRT 180 NSSTARSCPS VRPSTGSTSS SRYRNWSFLE EKTSLRSNDN TRRYYVDPTE LDGHPWRAAG 240 QQQEAGDAKR DPDRSPNAYG TDTTPSAAVP LLPPVPTSPA DGVARAAPAT AETVGGCCTA 300 QCRHQDRQGR HRHYLTYTIL QLRYSMACAA SCMAPGDLPS GSQFVRPAVS IDRTRAAGMG 360 RQPGGTGGAG VQQKLRKGLW SPEEDEKLYN HIILYGVGCW SSVPKLAGMH CYSSLGSGDA 420 RMPSLARIMW SQIASHLPGR TDNEIKNFWN SCLKKKLRQR GLDPSTHKPI SGNAEDQKQQ 480 AASTEGGTAP KQQQQQQEVF DPFPLTDSFD GSFDAAGAAL YGHLGSCKVD AAGGFVDYSS 540 VLDVPENLGY GGESSSNSSN NNNWNCAPEV NTVIDGVAAQ HWGGGDDGEA LLEHKFLLPC 600 HGQQEQSMPH FDFDISRGAV VGEFNLEFF

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MPSPTTVRVG STSRHVDRTV TLDSCKVDLC RSVLSFCRAA ACTGDPPRIK LYAKANKFGN  60
ICTGRRVTDC FRVELALDVT ERAREAAGQI ARDMRQALDA APAPSSFCNR DCARFGLHGL  120
RKRRFPLRLL SLAKHSSIMQ VTRARQVRVT PFCDDNNGLL LSSLSSPPPP RRRSGNGRRT  180
NSSTARSCPS VRPSTGSTSS SRYRNWSFLE EKTSLRSNDN TRRYYVDPTE LDGHPWRAAG  240
QQQEAGDAKR DPDRSPNAYG TDTTPSAAVP LLPPVPTSPA DGVARAAPAT AETVGGCCTA  300
QCRHQDRQGR HRHYLTYTIL QLRYSMACAA SCMAPGDLPS GSQFVRPAVS IDRTRAAGMG  360
RQPGGTGGAG VQQKLRKGLW SPEEDEKLYN HIILYGVGCW SSVPKLAGMH CYSSLGSGDA  420
RMPSLARIMW SQIASHLPGR TDNEIKNFWN SCLKKKLRQR GLDPSTHKPI SGNAEDQKQQ  480
AASTEGGTAP KQQQQQQEVF DPFPLTDSFD GSFDAAGAAL YGHLGSCKVD AAGGFVDYSS  540
VLDVPENLGY GGESSSNSSN NNNWNCAPEV NTVIDGVAAQ HWGGGDDGEA LLEHKFLLPC  600
HGQQEQSMPH FDFDISRGAV VGEFNLEFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	452	458	LKKKLRQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2327	33	91