PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02517.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 404aa MW: 42420.3 Da PI: 4.5572

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02517.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.4	7.9e-30	185	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs+fpr+YY+Cts+ +Cp++k+ve+s++dp+++++ Y+geH h+ Zmw_sc02517.1.g00050.1.sm.mk 185 SDKWSWRKYGQKPIKGSPFPRGYYKCTSNkDCPARKQVEQSSSDPNTLIVSYTGEHCHS 243 79************************99*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-29	178	245	IPR003657	WRKY domain
PROSITE profile	PS50811	29.298	179	245	IPR003657	WRKY domain
SuperFamily	SSF118290	1.1E-25	180	245	IPR003657	WRKY domain
SMART	SM00774	6.5E-35	184	244	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	186	242	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MEGDGGWHYG GHGYNNWDLD AVVRLGGGGG NAALEPVQDD PILALLQPQQ DVLPGALPPP 60 QQDVMPDALP QQQQGVLPDA NPWQELQGDM DLPMVADPAF ADLDAFLSDP MFAAPQSPPP 120 PSPRNEAPAP QQAPAAEPPA LGKAAAQPSS DAGAGSSRPK HARRSRKDME AKYVVTVPAP 180 YLPSSDKWSW RKYGQKPIKG SPFPRGYYKC TSNKDCPARK QVEQSSSDPN TLIVSYTGEH 240 CHSPPTNRNS RAGIMRSSSR APVAAGRGGS ASQPAAPQLV LPAPAAAAPP PAPPRSVYMD 300 FGKDDDDALA LQALIDDAVL APENAFLFLN PDYVAPPPVN AAGGEGNQPL PIPLENMAKD 360 VSRGTGSGTD GGQAPIPTNV AMDRFFGSPW EAAWPEAAPG PWGM

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MEGDGGWHYG GHGYNNWDLD AVVRLGGGGG NAALEPVQDD PILALLQPQQ DVLPGALPPP  60
QQDVMPDALP QQQQGVLPDA NPWQELQGDM DLPMVADPAF ADLDAFLSDP MFAAPQSPPP  120
PSPRNEAPAP QQAPAAEPPA LGKAAAQPSS DAGAGSSRPK HARRSRKDME AKYVVTVPAP  180
YLPSSDKWSW RKYGQKPIKG SPFPRGYYKC TSNKDCPARK QVEQSSSDPN TLIVSYTGEH  240
CHSPPTNRNS RAGIMRSSSR APVAAGRGGS ASQPAAPQLV LPAPAAAAPP PAPPRSVYMD  300
FGKDDDDALA LQALIDDAVL APENAFLFLN PDYVAPPPVN AAGGEGNQPL PIPLENMAKD  360
VSRGTGSGTD GGQAPIPTNV AMDRFFGSPW EAAWPEAAPG PWGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-18	168	246	2	80	Disease resistance protein RRS1
5w3x_D	7e-18	168	246	2	80	Disease resistance protein RRS1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34930	3	4