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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02512.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 28189.9 Da PI: 6.8458 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29 | 1.8e-09 | 62 | 83 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd+C +aHg Zmw_sc02512.1.g00140.1.am.mk 62 PCPEFRKGGSCRKGDNCEYAHG 83 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00642 | 1.6E-7 | 62 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-6 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MCSGPRKPSN PPPVAAAATA KDSAAASLLL ELAAADDLVA FRRAVEDDKA ASIDAACHCC 60 VPCPEFRKGG SCRKGDNCEY AHGVFECWLH PAQYRTRLCK DELHALSLKQ AGDMPAYNPM 120 PDTQLHMPTS PMVGANTAFG MDHSMAKAIM SSRASAFAKR SQSFIDRGGR APAARSLMSP 180 APTSSPSMLS DWSSPDGKLD WGVQGDELNK FRKSASFAFR GQFAAPVTTT PAEPDVSWVN 240 SLVRDGHAGD IFAQWPEQEQ IMA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692465.1 | 4e-96 | PREDICTED: zinc finger CCCH domain-containing protein 33-like | ||||
Swissprot | Q688R3 | 1e-86 | C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A287EPU9 | 1e-94 | A0A287EPU9_HORVV; Uncharacterized protein | ||||
STRING | Si021557m | 1e-90 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6013 | 21 | 33 |
Publications ? help Back to Top | |||
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