PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02512.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 344aa MW: 38372.3 Da PI: 7.1328

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02512.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.4	3.3e-22	55	126	1	72
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + + Zmw_sc02512.1.g00110.1.am.mk 55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASAA 126 7***************************************************************99888764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	9.91E-23	54	119	No hit	No description
Pfam	PF13837	3.1E-17	55	148	No hit	No description
PROSITE profile	PS50090	7.515	56	112	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAAEPPPQ PLPSSSSLER ERLPQWSHAE 60 TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA 120 AAASAAQPAE HDPGATAARQ FPFHDEMRRI FDARAERARA LESKKAKGKD VRPEDNEGGG 180 GGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTPS ADQGEVEAML 240 REFMRRQLEM EERWMEAAEA REAERRQREE EWRTAMVXXX XXXXXXARAR RSARSDGTSS 300 SQHCSPSSAA TPRDTSPLQS IHPRRYGPTP RTNPASELAP SPRI

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAAEPPPQ PLPSSSSLER ERLPQWSHAE  60
TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA  120
AAASAAQPAE HDPGATAARQ FPFHDEMRRI FDARAERARA LESKKAKGKD VRPEDNEGGG  180
GGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTPS ADQGEVEAML  240
REFMRRQLEM EERWMEAAEA REAERRQREE EWRTAMVXXX XXXXXXARAR RSARSDGTSS  300
SQHCSPSSAA TPRDTSPLQS IHPRRYGPTP RTNPASELAP SPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	221	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805344.1	2e-88	LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like
TrEMBL	A0A0E0H8W8	1e-84	A0A0E0H8W8_ORYNI; Uncharacterized protein
STRING	ONIVA05G01910.1	2e-85	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34