PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02505.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 409aa    MW: 43094.4 Da    PI: 7.5729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02505.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000273043371654
                                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + ++   L++l+ +      +K + a++L +++eYIk L
  Zmw_sc02505.1.g00050.1.am.mkhc 304 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 337
                                     555666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-4298341No hitNo description
SuperFamilySSF474595.5E-10298350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7298346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYYAAGG AAPHGGWWNT AATCSTELAG VSTWSSALAG SYDIAAEGAK  60
AKSATTASSV SPGNNSSVTF QEPTTGVADA AGVAVQQPLA SFTDWSHLVN GSGVTLHGFL  120
QDGQQHDMSS RTDQLNHINA PSLMNPSSNN LTLQGHHEQG HGHQQLMSNF NLGSELLLSP  180
TSPYGIQSSL LRSLVEPMAA TVAKPALPAG FQQYDQYGHQ MGMGQAPAAG RFALPLQFTN  240
EAAAFWNPSA GFGAPAPEPN QASLGAAKPS PVTNKKTNGQ PAFKKPRLET PSPLPTFKVR  300
KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ VGALSAPYLK KKGHQVPHLK  360
SSSPDKSKDG HGEILLKGRG LCLVPISSTF AVASEVPVDF WTPFGANFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787