PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc02496.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 415aa MW: 44974.8 Da PI: 5.48

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02496.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.6	7.7e-37	54	154	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk++rrkC+++C la+ fpa+q++ f +h+lFG+sn++k+l++++ e ++am++l++eAeara dPvyG++g+i+ Zmw_sc02496.1.g00090.1.sm.mk 54 ACAACKYQRRKCNPECRLARFFPADQKRLFLHAHRLFGVSNIQKTLRRTDAEYEQEAMRALIFEAEARAGDPVYGCFGIIR 134 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 klqqq++ a+l++l++++ Zmw_sc02496.1.g00090.1.sm.mk 135 KLQQQIAVGTAQLDALHQQI 154 *************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.423	53	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-34	54	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSPTSNSSKP PRSHLRQVDK TTTGSAASPL GPPSRNHSAP SPSAAAGNGG QSQACAACKY 60 QRRKCNPECR LARFFPADQK RLFLHAHRLF GVSNIQKTLR RTDAEYEQEA MRALIFEAEA 120 RAGDPVYGCF GIIRKLQQQI AVGTAQLDAL HQQIAMYRQA AAAGGFDQPA NGTAVLAAPG 180 PDNVSMSMDA YFGGGAEHVP VHQTGAEHVP VHQTGAEHVP VHQTGAEHVP VHQTGAGFVD 240 VHDQQQQQHY NALEAIDDHQ DYQKAQFNGF CYDGTARDEL ASGDGRALQE YCYSDASLKA 300 GAPAQLTSLE EQLENHFQND EACFIDGIDV KPQDLPGTMM AEHYDSHGGV EQPMENKIAA 360 EGVKYDAYQM AGLLKYDADQ MAGMLKYDAD QMAEPAVPAT MQRELEQLGF TSSSF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSPTSNSSKP PRSHLRQVDK TTTGSAASPL GPPSRNHSAP SPSAAAGNGG QSQACAACKY  60
QRRKCNPECR LARFFPADQK RLFLHAHRLF GVSNIQKTLR RTDAEYEQEA MRALIFEAEA  120
RAGDPVYGCF GIIRKLQQQI AVGTAQLDAL HQQIAMYRQA AAAGGFDQPA NGTAVLAAPG  180
PDNVSMSMDA YFGGGAEHVP VHQTGAEHVP VHQTGAEHVP VHQTGAEHVP VHQTGAGFVD  240
VHDQQQQQHY NALEAIDDHQ DYQKAQFNGF CYDGTARDEL ASGDGRALQE YCYSDASLKA  300
GAPAQLTSLE EQLENHFQND EACFIDGIDV KPQDLPGTMM AEHYDSHGGV EQPMENKIAA  360
EGVKYDAYQM AGLLKYDADQ MAGMLKYDAD QMAEPAVPAT MQRELEQLGF TSSSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-24	44	157	1	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-24	44	157	1	114	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61