PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02493.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 503aa    MW: 53844.1 Da    PI: 8.5998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02493.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0585107123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zmw_sc02493.1.g00090.1.am.mk  85 FVCEICHKGFQRDQNLQLHRRGH 107
                                   89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-684107No hitNo description
SMARTSM003550.04685107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63785107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355170134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4157189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-6164189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSAAEEELLQ QRRYRVIKPF MGSPPAPGMG NDDDGDLQRV TAGTSEPPPA GPPAAKKKRS  60
LPGTPDPTAE VIALSPKTLM ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGGGG  120
GGADGGGPPR KRVYVCPEPS CVHHNPARAL GDLTGIKKHY CRKHGEKKWK CERCAKRYAV  180
QSDWKAHAKV CGTREYKCDC GTVFSRLMNK LRARTADRFD DSCTLVPKGK GHVPVSPRPH  240
LGRDSFVTHR AFCDALAQEN NKLAQPMNMA TVASALQGQA ALPPSTLQAD DDVFDAAEDD  300
FDGMLDTKSP QLRMLPISDD PPLIPPPLGM AGCMLSGLAA RSVTAPAFSF SGNSRINNMM  360
GLDMPHSDPD VGFSSASMSA TALLQKAAEL GATTSVYGSA PGFPGSGFGP MFGGGPDRVP  420
PMSPFGPPLP AQTQLVGFDV GGLLPGQQYR GGSMTRAIGS LMHGGLQQGV DHRRQDDDDD  480
KRVVDDQSFS GVGPFGSHMG TWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-28165268370Zinc finger protein JACKDAW
5b3h_F6e-28165268370Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.11e-180protein indeterminate-domain 2-like
TrEMBLA0A2T7DBX20.0A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSi001316m1e-175(Setaria italica)
STRINGSb03g045120.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534