PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02483.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 1149aa MW: 124730 Da PI: 10.8598

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02483.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.4	4.9e-120	594	921	36	374
GRAS 36 dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiD 116 + + R+a +ft AL++rl+ + p+s+ + ++++ ++ f+e++P+lkf+h+taNqaIleav+ +vH+iD Zmw_sc02483.1.g00100.1.am.mk 594 SGIGRVAVHFTAALSRRLFP--P------PTSPPPAPPAADHALLYHHFYEACPYLKFAHFTANQAILEAVQDRAKVHVID 666 6788*************9..3......33333333379999********************************** PP GRAS 117 fdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 f+++qGlQWpaL+qaLa Rp+gpp lRiTg+g+p++ ++ l+e+g rLa++A++++vpf f+ ++a+rl+++++++L+v+ Zmw_sc02483.1.g00100.1.am.mk 667 FSLMQGLQWPALIQALALRPGGPPFLRITGIGPPSPPGRDDLREVGLRLADLARSVRVPFAFRGVAANRLDEVRPWMLQVS 747 ***************************************************************************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 pgEa+aVn+vlqlhrll ++ + + ++d+vL++v s++Pkv++vveqeadhn++ Fl+rf+eal yysa+fdsl+a Zmw_sc02483.1.g00100.1.am.mk 748 PGEAVAVNSVLQLHRLLGDPSADRAPIDAVLDCVSSMRPKVFTVVEQEADHNKSGFLDRFTEALFYYSAVFDSLDAA---S 825 **********************************************************************999...3 PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 + +v +++l+rei+++v++ega r+erhe l++Wrerl++aG+ +vpl+ +a qa++l+ ++++g+ vee +g+l+ Zmw_sc02483.1.g00100.1.am.mk 826 GGAGDTVAEAYLEREICDIVCAEGAVRKERHEPLQRWRERLSRAGLVAVPLGANALRQARMLVGLFSGEGHCVEEAEGCLT 906 58888999999****************************************************************** PP GRAS 360 lgWkdrpLvsvSaWr 374 lgW++rpL+s+SaWr Zmw_sc02483.1.g00100.1.am.mk 907 LGWHGRPLFSASAWR 921 ************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.157	523	901	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-117	594	921	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 1149 aa Download sequence Send to blast
MFEDGCVVVC GVIPHARDLL ELHQASPITG RSAISPPPPV RFQWPSSPRF PSLRRWSSDT 60 ESEARVDPLN LGLPAGVEHW TWSSAAVQQQ SVSRGGVERS RGFACFPCAS TGPVSAHQYL 120 LLLPPPGLLA PAGRCEYQTK GLRAPGTCRS WSFRAWPSMC RKGQQQRVLY LRSLKMPPSR 180 QLLQSAPPTA TCMHRMVVKY GVLVPATEDR QLAFACLELA ATLHTTAFPV DTCGTTAPTQ 240 ATGLQRVARH DQPRNKRAAP RDAACTCNFY QTKRPWWFRS SRGGCGCRVL RAGGGAEQRY 300 ARCQQRPKST LASINVRWMD GGCAPAPTSA VTVPQRGSAP DPCGSKTDSH GATMATLSLS 360 QLGELVLSAA LQGGLAEVGK YGCLYRRILV TGYVSRAPYH QEKWCPAVCG LRDLGRQDQE 420 TGIDRRSSRA GPGRPHGSAS IRSPPSDSFP RPTCPRAPRA RGRRSTCSRT RSPHLSDVTS 480 PPLAALLLNP HPPTNHAPPV HQSHAHAARQ ARKPSLTLTA AHTHTVHATP RGRWRSRPRP 540 RAPTSACRLC RWSSPTTPGW RTTPPRRPRT WPCRLTSRQR SRPTRRSWPR XAASGIGRVA 600 VHFTAALSRR LFPPPTSPPP APPAADHALL YHHFYEACPY LKFAHFTANQ AILEAVQDRA 660 KVHVIDFSLM QGLQWPALIQ ALALRPGGPP FLRITGIGPP SPPGRDDLRE VGLRLADLAR 720 SVRVPFAFRG VAANRLDEVR PWMLQVSPGE AVAVNSVLQL HRLLGDPSAD RAPIDAVLDC 780 VSSMRPKVFT VVEQEADHNK SGFLDRFTEA LFYYSAVFDS LDAASGGAGD TVAEAYLERE 840 ICDIVCAEGA VRKERHEPLQ RWRERLSRAG LVAVPLGANA LRQARMLVGL FSGEGHCVEE 900 AEGCLTLGWH GRPLFSASAW RAEENNPSDS NVDGSNGSEE SNISCSLRCA AVAWFRGKSS 960 RMRPPLFPVS TCRLLAIGQS TSICSGTKNQ LAAAASSRCA TSADSSGFGR RAGAVMRAAA 1020 RRVSSKPKRC GGTLQQRKAG YVSETQVREP RSHLRSPRAC AQQRGGEERF GHRSTMRSSK 1080 AEGAEPGDRT TCRPAFTCPS ARAALRVSSA HGGRVAGADH GGVQAPFPAC AAARCVRSVW 1140 RTTTQCFSG

Sequence ? help Back to Top

Protein Sequence Length: 1149 aa Download sequence Send to blast

MFEDGCVVVC GVIPHARDLL ELHQASPITG RSAISPPPPV RFQWPSSPRF PSLRRWSSDT  60
ESEARVDPLN LGLPAGVEHW TWSSAAVQQQ SVSRGGVERS RGFACFPCAS TGPVSAHQYL  120
LLLPPPGLLA PAGRCEYQTK GLRAPGTCRS WSFRAWPSMC RKGQQQRVLY LRSLKMPPSR  180
QLLQSAPPTA TCMHRMVVKY GVLVPATEDR QLAFACLELA ATLHTTAFPV DTCGTTAPTQ  240
ATGLQRVARH DQPRNKRAAP RDAACTCNFY QTKRPWWFRS SRGGCGCRVL RAGGGAEQRY  300
ARCQQRPKST LASINVRWMD GGCAPAPTSA VTVPQRGSAP DPCGSKTDSH GATMATLSLS  360
QLGELVLSAA LQGGLAEVGK YGCLYRRILV TGYVSRAPYH QEKWCPAVCG LRDLGRQDQE  420
TGIDRRSSRA GPGRPHGSAS IRSPPSDSFP RPTCPRAPRA RGRRSTCSRT RSPHLSDVTS  480
PPLAALLLNP HPPTNHAPPV HQSHAHAARQ ARKPSLTLTA AHTHTVHATP RGRWRSRPRP  540
RAPTSACRLC RWSSPTTPGW RTTPPRRPRT WPCRLTSRQR SRPTRRSWPR XAASGIGRVA  600
VHFTAALSRR LFPPPTSPPP APPAADHALL YHHFYEACPY LKFAHFTANQ AILEAVQDRA  660
KVHVIDFSLM QGLQWPALIQ ALALRPGGPP FLRITGIGPP SPPGRDDLRE VGLRLADLAR  720
SVRVPFAFRG VAANRLDEVR PWMLQVSPGE AVAVNSVLQL HRLLGDPSAD RAPIDAVLDC  780
VSSMRPKVFT VVEQEADHNK SGFLDRFTEA LFYYSAVFDS LDAASGGAGD TVAEAYLERE  840
ICDIVCAEGA VRKERHEPLQ RWRERLSRAG LVAVPLGANA LRQARMLVGL FSGEGHCVEE  900
AEGCLTLGWH GRPLFSASAW RAEENNPSDS NVDGSNGSEE SNISCSLRCA AVAWFRGKSS  960
RMRPPLFPVS TCRLLAIGQS TSICSGTKNQ LAAAASSRCA TSADSSGFGR RAGAVMRAAA  1020
RRVSSKPKRC GGTLQQRKAG YVSETQVREP RSHLRSPRAC AQQRGGEERF GHRSTMRSSK  1080
AEGAEPGDRT TCRPAFTCPS ARAALRVSSA HGGRVAGADH GGVQAPFPAC AAARCVRSVW  1140
RTTTQCFSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-55	598	920	57	377	Protein SCARECROW
5b3h_D	9e-55	598	920	57	377	Protein SCARECROW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	530	540	RGRWRSRPRPR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138