PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02481.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 981aa    MW: 110002 Da    PI: 9.3018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02481.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-074682341
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                                     W+++E e+++ a +++G++ W+++a  +   Rt +++ 
  Zmw_sc02481.1.g00050.1.am.mkhc 46 QWSKDELERFYGAYRKYGKD-WRKVAGAIR-DRTSEMVE 82
                                    6*****************99.*********.***98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-94192IPR009057Homeodomain-like
SMARTSM007170.00564391IPR001005SANT/Myb domain
PfamPF002497.4E-64686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-44685IPR009057Homeodomain-like
CDDcd001671.15E-44789No hitNo description
SMARTSM011359.3E-57616717IPR033471DIRP domain
PfamPF065844.2E-33616716IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MASSRKVRNA NKRYTKINYD WQDKDDTNVH KSKVRKKKLS DMLGSQWSKD ELERFYGAYR  60
KYGKDWRKVA GAIRDRTSEM VEALYNMNKA YLSLPEGTAT AEGLIAMMTD HYNILDGSNS  120
DHESNDSPKA SRKPQKRGRA RFQSKTSDTR YPDLLQSQPA SSTYGCLSLL KKKSSGDLVG  180
SRPRAVGKRT PRVPVSSMYY RDDRVVAYRQ AKTDADNVDD EGTHVAALAL TEVCQRGGSP  240
QVSETPGRSG DRMFLSPVKS SDRKNADSEM GSSKLHGFHL DADYPEGSLG SGEAETGDYT  300
KGASLFMKNK GSASGKPQKK VKRYQKRKKK SARKTGDQFE DDREACSGTE EGHRVRKAKG  360
DSELEALGWP SSTSNKRSRQ LFFGDESSAL DALHTLADLS VNILQPSSIV ESESSAQIKE  420
ENRDDDSDEK PGMPAATSMY EQKVNSKSTA RKVKRQPEIS NMEMVTRKKT KLAKDPHHDG  480
STTSDVKQQA CACGVKSEKK KRKSSTAKVL KDEKSMLKDV EKTEVSGEEG KVSSNKETTT  540
QGETTPQADL SSKGKNRRKL GIQQALTEEC KTTKGADDTG SDKLPYSVNN VIDLKDKLSH  600
CLSSCLLRRW CMFEWFYSAI DYPWFAKSEF VEYLNHVKLG HVPRLTRVEW GVIRSSLGKP  660
RRLSKQFLHE EREKLSQYRD SVRQHYAELC SGVREGLPTD LARPLAVGQR VIACHPRTRE  720
LHDGNILTVD NSRCRVQFDR PELGVEFVMD IDCMPLHPME NFPESLRQQN IMNKYLSEVK  780
LEDQMKELVR GGAARFTSNV NVNSADAAFH IPSGHPINTL MKQAKGDTVD SIVQAKATVN  840
EVAIAAQQAM YNQPCSLSQI QEREADIRAL AELSRALDKK EALLVELRHM NEEVSGKQKD  900
GEDLKHFRTQ YAMVLVQLRD SNDQNCTEKQ YHPAEVAHIL DSALSRLQPC SSQNIPIFRE  960
IEMCMGIIKN QMLALIPTPS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317333QKKVKRYQKRKKKSARK
2320326VKRYQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820688.10.0protein ALWAYS EARLY 2-like
TrEMBLA0A2T8IHJ00.0A0A2T8IHJ0_9POAL; Uncharacterized protein
STRINGSi025839m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331