PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02479.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 396aa    MW: 43390.6 Da    PI: 10.6756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02479.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19101151256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zmw_sc02479.1.g00070.1.am.mk 101 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 151
                                   59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.70E-26100158No hitNo description
Gene3DG3DSA:3.30.730.101.1E-29101158IPR001471AP2/ERF domain
SMARTSM003801.1E-31101164IPR001471AP2/ERF domain
PROSITE profilePS5103222.695101158IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21101158IPR016177DNA-binding domain
PfamPF008476.4E-13102151IPR001471AP2/ERF domain
PRINTSPR003673.8E-9102113IPR001471AP2/ERF domain
PRINTSPR003673.8E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDASLRTLPP GSSFPGEVRS AVSSLLLSPG GASALDTVFS HLPPPVAIPP LGSSVYYRQC  60
ELLRHFAASQ PHPTTACSSS SSSAATFQPT GDETALRGQK LYRGVRQRQW GKWVAEIRLP  120
QNRVRVWLGT YDSPETAAHA YDRAAHRLRG EYARLNFPGV MDGRGCPENL RQVRDAVDAK  180
IQAIRARLAR KRARARKQRE EQGKQLPARS EGANQAPPAT TTAARPVLSE GATTTSETTT  240
TTTTTPYGSP DGVLSVSAAS ADGELPLEHM PSFDPELIWE SRAEQRTQAW ARKQREDFAR  300
VSRSRQESPS NNCSVSLKSA PERTNATRAL ARDGYSFLLR VTVQQMEGAP PPPPPASSSP  360
SHPSPLPRTK NNWQRRLWIK PTRRDIAAYA SAIWLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17100158463ATERF1
3gcc_A2e-17100158463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194ARKRARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808129.11e-117ethylene-responsive transcription factor ERF061
TrEMBLA0A2S3H9F51e-116A0A2S3H9F5_9POAL; Uncharacterized protein
STRINGPavir.J01332.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842