PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02465.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 360aa    MW: 38736.9 Da    PI: 4.4932
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02465.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-07447542
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                     C+ ++  e++  C  ++  lC+ C +e H        H++vpl
  Zmw_sc02465.1.g00010.1.sm.mkhc  4 QCNACGAAEARVLCCADEAVLCAACDEEVHAAnkfagkHQRVPL 47
                                    7******99*********************66899999999986 PP
2zf-B_box28.23.8e-095991335
                        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                                     +kC+ ++e    +fC +++ llC+ C +++H 
  Zmw_sc02465.1.g00010.1.sm.mkhc 59 VPKCDICQEASGYFFCLEDRALLCRACDVSIHT 91
                                    589***************************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.68147IPR000315B-box-type zinc finger
CDDcd000213.31E-8347No hitNo description
SMARTSM003365.6E-9447IPR000315B-box-type zinc finger
PfamPF006431.6E-5447IPR000315B-box-type zinc finger
SMARTSM003366.7E-1657104IPR000315B-box-type zinc finger
CDDcd000211.27E-960104No hitNo description
PfamPF006432.3E-76099IPR000315B-box-type zinc finger
PROSITE profilePS501198.87362104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQIQCNACGA AEARVLCCAD EAVLCAACDE EVHAANKFAG KHQRVPLLRH DAPAAEPAVP  60
KCDICQEASG YFFCLEDRAL LCRACDVSIH TVNPFVSAHQ RFLLTGVQVG LDPADPIPPV  120
ADKHVNADGG SVCQKHLSRR NPTVPSSGEA SDSVLSQNVF NGDYSRNISV PTVRTGADNW  180
TIYNISIQSL EPRRELLSDE NPALVQSSQA TAAFSNQING NNDQAYNLPL SAGNGSENLP  240
DWPVDEFFSS SEFGPNLSFA EHCSKGDNTK LGSAGGSPQC RLAEGFVSEE FLGLVPGFDT  300
EESWTVPEVP SPPTASGLHW QGSFCEPVND STMFVPEVSS LQSSENNFAV PCGFKRRRQF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811997.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7E2Y00.0A0A2T7E2Y0_9POAL; Uncharacterized protein
STRINGPavir.J07875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382