PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02447.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 1042aa MW: 112104 Da PI: 9.8578

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02447.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	75.9	6.4e-24	289	337	2	50
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 C vegC+adls++++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsr+ Zmw_sc02447.1.g00040.1.am.mk 289 CAVEGCAADLSKCRDYHRRHKVCEAHSKTPVVIVAGQQQRFCQQCSRYA 337 ***********************************************85 PP
2	SBP	43.8	7e-14	409	440	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 s fh l efDe krsCr+rL++hn+rrrk q+ Zmw_sc02447.1.g00040.1.am.mk 409 SSFHLLGEFDEIKRSCRKRLDGHNRRRRKVQP 440 88***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.9E-24	281	336	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.802	286	368	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-22	287	337	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-16	289	336	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	10.545	360	438	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.23E-10	409	442	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-6	409	437	IPR004333	Transcription factor, SBP-box
Pfam	PF11820	1.0E-30	975	1040	IPR021775	Protein of unknown function DUF3339

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence Send to blast
MNAHQCTAAV IVRKATKSAF GHVVDSFRPV TCSDDDRPRQ RALLLLFYSP SPQHLPCLVV 60 VQKDSFHPPR KEKPNPERQR LHAARSGGKH QSRGILPLVS RFSAFCSLHM AVPLLAIIAT 120 FGVWGPPIGV HFCCAVCATT VPFLPPPSIY LSIRTSSPTL LAQASQAFWA WCLLPPSIPS 180 SSSSIHPIRE FLEAKGFCLL FLDRSSGIVV VKGLRSPLLM DWDAKMPSWD LGTVVGPSSG 240 NGGGGGTLDL KLGRPTSWKA AAPLPPPPSS SAPAKRPRSG RAQQAVPACA VEGCAADLSK 300 CRDYHRRHKV CEAHSKTPVV IVAGQQQRFC QQCSRYARTL TGPEETLVEL AATTRARASW 360 ASPQQRNDAA GAVELDSWVD ASGRFQGSRG QQIQLCSPMC VRVSLSSLSS FHLLGEFDEI 420 KRSCRKRLDG HNRRRRKVQP DPLNPAGLFA NHHGMTRFAA YPQLFSSPSM ADSKWPATVV 480 KTEASAFKDH YNPALHLGNG AASILNGKDK KHFPFLTPHG DDAALGCQPF TITSSAESSS 540 KQSNGNCALS LLSDNQTPAQ LMIPTGQPLG AALQYGNAAG LPGDLGVSLA GMSYDESRRP 600 LVDVVGGDVG GGGCCCRFNR RRRDLVLVRL RDTHQRSARP ALHVDVGIGD AEADGGKRSL 660 ALHRGENQPG RCTRQAGTIG SPWRDQLLSG RSLEFRDETA EHTYARRPPT MPVRWPRVQD 720 LRGTSPGSRP APNVYLMFLT QRHDPVPDRK RPGIDEGGRR QDEGTDLSTF SLVPIRSVFL 780 PPSRAASDSP LIVDRRYSSK LETRSARIHL TSPEKNEAMT ATNGARGGEE HYSRLMRELC 840 ALLVTIISSS AVSPGQPRQR PSPAAVVSML LGASMALMLC GSVTFAVGLL LVPWVAGLAL 900 LGGFAGAVST LASGATELQK TICLVQATGK KANQDALLCS CRAAKIVWIS GEVRVSCCRE 960 GVSSQKGEMN GGPSTDWGPI IVAVILFVVL SPGLLFQLPA RTRVLEFGNM ATSAIAILVH 1020 AIIFFCLLTI FVVAIGVHIY AA

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence Send to blast

MNAHQCTAAV IVRKATKSAF GHVVDSFRPV TCSDDDRPRQ RALLLLFYSP SPQHLPCLVV  60
VQKDSFHPPR KEKPNPERQR LHAARSGGKH QSRGILPLVS RFSAFCSLHM AVPLLAIIAT  120
FGVWGPPIGV HFCCAVCATT VPFLPPPSIY LSIRTSSPTL LAQASQAFWA WCLLPPSIPS  180
SSSSIHPIRE FLEAKGFCLL FLDRSSGIVV VKGLRSPLLM DWDAKMPSWD LGTVVGPSSG  240
NGGGGGTLDL KLGRPTSWKA AAPLPPPPSS SAPAKRPRSG RAQQAVPACA VEGCAADLSK  300
CRDYHRRHKV CEAHSKTPVV IVAGQQQRFC QQCSRYARTL TGPEETLVEL AATTRARASW  360
ASPQQRNDAA GAVELDSWVD ASGRFQGSRG QQIQLCSPMC VRVSLSSLSS FHLLGEFDEI  420
KRSCRKRLDG HNRRRRKVQP DPLNPAGLFA NHHGMTRFAA YPQLFSSPSM ADSKWPATVV  480
KTEASAFKDH YNPALHLGNG AASILNGKDK KHFPFLTPHG DDAALGCQPF TITSSAESSS  540
KQSNGNCALS LLSDNQTPAQ LMIPTGQPLG AALQYGNAAG LPGDLGVSLA GMSYDESRRP  600
LVDVVGGDVG GGGCCCRFNR RRRDLVLVRL RDTHQRSARP ALHVDVGIGD AEADGGKRSL  660
ALHRGENQPG RCTRQAGTIG SPWRDQLLSG RSLEFRDETA EHTYARRPPT MPVRWPRVQD  720
LRGTSPGSRP APNVYLMFLT QRHDPVPDRK RPGIDEGGRR QDEGTDLSTF SLVPIRSVFL  780
PPSRAASDSP LIVDRRYSSK LETRSARIHL TSPEKNEAMT ATNGARGGEE HYSRLMRELC  840
ALLVTIISSS AVSPGQPRQR PSPAAVVSML LGASMALMLC GSVTFAVGLL LVPWVAGLAL  900
LGGFAGAVST LASGATELQK TICLVQATGK KANQDALLCS CRAAKIVWIS GEVRVSCCRE  960
GVSSQKGEMN GGPSTDWGPI IVAVILFVVL SPGLLFQLPA RTRVLEFGNM ATSAIAILVH  1020
AIIFFCLLTI FVVAIGVHIY AA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	1e-17	289	336	6	53	squamosa promoter-binding protein-like 12

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38