PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02416.1.g00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 26918.7 Da PI: 6.7896 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.3e-31 | 197 | 251 | 2 | 56 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeH 56 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H Zmw_sc02416.1.g00250.1.am.mk 197 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKH 251 8*****************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 181 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.12E-26 | 188 | 251 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.218 | 191 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-33 | 196 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 197 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MADARRVDHD GGHQRHLSGD FQFHDDLASL FAQRLEAGTP MQQQPWFTDY LQQASTLTPL 60 DFDSFAGEFD MSTAVEEVKR ELAVDGTGAA SGVGMPGGGG GTSTTAPLMQ NSMSLSSTSS 120 EACGAGGGAG AGEESPGKCK EEEGEGDESK DGSAAKGGGE MDGKNKKGAA KGKGKGEKRP 180 RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTTQKCPVK KRVERSFQDA 240 AVVITTYEGK H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-25 | 187 | 251 | 8 | 72 | Probable WRKY transcription factor 4 |
2lex_A | 5e-25 | 187 | 251 | 8 | 72 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807851.1 | 2e-90 | uncharacterized protein LOC112886239 | ||||
TrEMBL | A0A2S3H9K9 | 4e-89 | A0A2S3H9K9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EA94 | 4e-89 | A0A2T7EA94_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J10895.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |