PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02415.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 410aa    MW: 46045.6 Da    PI: 7.9885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02415.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.61.4e-1592154156
                                   TT--SS--HHHHHHHHHH.......HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeel.......FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   r+  +++t+ q+++Le++       F+ +++p++++r+ ++++lgL+ rq+k+WFqNrR+ +k
  Zmw_sc02415.1.g00070.1.am.mk  92 RKGYHRHTPRQIQQLEAYvlllswiFKDCPHPDENQRAVMSRELGLEPRQIKFWFQNRRTHMK 154
                                   6778899999***99997666666699********************************9988 PP
2START72.31.3e-2328939168164
                                   CGGCT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--. CS
                         START  68 dkeqWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe 138
                                    + +W e ++    ka t++v+ +g     + l   + el  ++plvp R+f f+Ry++q ++g w++vdvSvd + +   
  Zmw_sc02415.1.g00070.1.am.mk 289 GN-KWMEVFPgivsKAHTVDVLVNGiggrnESLIMVYEELHTMTPLVPtREFSFLRYCKQIEQGLWAVVDVSVDGQHYGV- 367
                                   55.99999999999****************8888888888888*******************************999987. PP

                                   -TTSEE-EESSEEEEEEEECTCEEEE CS
                         START 139 sssvvRaellpSgiliepksnghskv 164
                                     +  R+++lpSg+li ++sng+skv
  Zmw_sc02415.1.g00070.1.am.mk 368 --PPSRSRRLPSGCLIADMSNGYSKV 391
                                   ..467999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1581156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1782158IPR009057Homeodomain-like
PROSITE profilePS5007114.23689156IPR001356Homeobox domain
SMARTSM003891.2E-1190160IPR001356Homeobox domain
PfamPF000465.2E-1392154IPR001356Homeobox domain
CDDcd000863.20E-1592157No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
SuperFamilySSF559611.79E-15290392No hitNo description
PROSITE profilePS5084819.188291392IPR002913START domain
PfamPF018522.0E-18291391IPR002913START domain
PROSITE patternPS001970393401IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MQGVTTYKLS FAEPGLSANA SLTTVFRLRR FAEAGCGDCC GGDAATGMGT GYEWPVVKRG  60
FDLSEREGLV NIRTAAMDFG DEPEDSSSQR RRKGYHRHTP RQIQQLEAYV LLLSWIFKDC  120
PHPDENQRAV MSRELGLEPR QIKFWFQNRR THMKAQHERV DNCFLRTEND KIRCENISMR  180
EALRNVICPN CGGPPVAEDY FDEHKLRMEN ASLKEELERI SSFTSKHLGR SFMPMPPMPT  240
MPASGLDLSV GTMSAPALDL DLLGSGSTGS RMGPFRSSIR FNLPMPVHGN KWMEVFPGIV  300
SKAHTVDVLV NGIGGRNESL IMVYEELHTM TPLVPTREFS FLRYCKQIEQ GLWAVVDVSV  360
DGQHYGVPPS RSRRLPSGCL IADMSNGYSK VSCAKADCST CTRFVLFARW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642098.15e-99homeobox-leucine zipper protein ROC8
SwissprotQ69T581e-100ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A3L6F4D21e-126A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRINGGSMUA_Achr7P11310_0011e-104(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4240423