PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02414.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

DBB

Protein Properties

Length: 328aa MW: 34722.7 Da PI: 4.9753

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02414.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.6	9.5e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e e++ C ++ lC+ C e H H++ p Zmw_sc02414.1.g00140.1.am.mk 4 LCSSCEAAEASVLCCADDAALCARCDREVHAAnrlagkHQRLP 46 7****99*******************6577888998877 PP
2	zf-B_box	19	2.9e-06	80	109	14	37
zf-B_box 14 lqlfCedCqqllCedClleeHkg......H 37 + +fC +++ llC++C ++ H H Zmw_sc02414.1.g00140.1.am.mk 80 AYFFCLEDRALLCRSCDVAVHTAndfvsaH 109 78******************9554555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.021	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-10	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.39E-7	3	46	No hit	No description
SMART	SM00336	4.1E-6	76	114	IPR000315	B-box-type zinc finger
CDD	cd00021	8.50E-6	80	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MKVLCSSCEA AEASVLCCAD DAALCARCDR EVHAANRLAG KHQRLPLLAP GAASAAALAP 60 PSRPGILIDR SILPVQECDA YFFCLEDRAL LCRSCDVAVH TANDFVSAHR RFLLTGVQVG 120 QEQGEDDRSV EQLEPEPQPS PRPPVKRAPP PPFGGQGDFS WAVAAPDAAA SLPDWSAVSE 180 QLGSPAPRHA EALSRNTPKR SPAFGAGQGR VAGGVMDWPL GEFFRGVSDF GGGFGFGESG 240 NSKAEGGSAG GSPNYWSEEE DRDADEFFGQ VPEMKWSVPE LPSPPTASGL HWQNGARESA 300 AFVPDVCSPD ASLRWFAAAA AGNKRRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020395809.1	1e-150	B-box zinc finger protein 22
TrEMBL	A0A1D6M067	1e-149	A0A1D6M067_MAIZE; B-box zinc finger protein 22
TrEMBL	A0A3L6E6D1	1e-149	A0A3L6E6D1_MAIZE; B-box zinc finger protein 22
STRING	Si022650m	1e-138	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1794	33	82