PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02400.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 304aa    MW: 32361.2 Da    PI: 7.1933
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02400.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20148198255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +ng  +r++lg+++tae+Aa a+++a+ +++g
  Zmw_sc02400.1.g00100.1.sm.mk 148 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 198
                                   8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.01E-30147206No hitNo description
Gene3DG3DSA:3.30.730.105.0E-32147206IPR001471AP2/ERF domain
PfamPF008472.6E-14148198IPR001471AP2/ERF domain
PROSITE profilePS5103224.25148206IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23148208IPR016177DNA-binding domain
SMARTSM003802.2E-38148212IPR001471AP2/ERF domain
PRINTSPR003671.1E-10149160IPR001471AP2/ERF domain
PRINTSPR003671.1E-10172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLLNPASEAL VLDSIRQPLL EESAAVVKKE EATTRPAYRR SASFESLVAD QWSDSLPFRT  60
DDADDMVVFG ALRDAFAYGW LPDGSFAAVK PEPLPSPDCS SCSYDGSYSF GVAEPPLTPG  120
SSCTTDQATP KREEQEQAAA AAVARGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTYD  180
TAEDAALAYD RAAYRMRGSR ALLNFPLRIG SEIAAAAAAA ATAAGDKRPS PKPTTSSDSS  240
SFSSSSSSSG SPKRRKRGEA AAATMSLPLV PPPSQLSRPA QPWFPAVPAE QVVAIAPRVE  300
QLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-40144211168ATERF1
3gcc_A9e-40144211168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826088.11e-123ethylene-responsive transcription factor 2-like
SwissprotO803372e-55EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0A9QX361e-122A0A0A9QX36_ARUDO; Uncharacterized protein
STRINGPavir.Ga01099.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]