PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02396.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 507aa MW: 54304.3 Da PI: 10.9607

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02396.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	211	271	1	59
---SS-EEEEEEE--TT-SS-E..EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefpr..sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s pr sYYrCt++ C+vkk+v+r a+d++vv++tYeg Hnh+ Zmw_sc02396.1.g00070.1.am.mkhc 211 LDDGYRWRKYGQKAVKNSASPRlkSYYRCTHHACNVKKQVQRLAKDTSVVVTTYEGVHNHP 271 59*****************8779*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-30	197	271	IPR003657	WRKY domain
SuperFamily	SSF118290	1.29E-25	203	272	IPR003657	WRKY domain
PROSITE profile	PS50811	25.993	206	273	IPR003657	WRKY domain
SMART	SM00774	4.1E-35	211	272	IPR003657	WRKY domain
Pfam	PF03106	8.6E-23	212	271	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MMKEWTGRLS CIRAVVELWL LAWLLPHAVL TYDSSPHRAR LLERSARLPN AFHLPASSVF 60 PLTGTQSPSP MEDSLRGAHQ HQLSEFLALT STGAAPRPQE KQQGSSNVAA THLAPTGAVS 120 CSPLVDWTSL LLSSAPGLPQ SQKHAAAGAC EQENAGGGEG SSTVTTATAS GGGSSSCKEM 180 VKAGRKGGGR GKKKASRPRF AFQTRSESDV LDDGYRWRKY GQKAVKNSAS PRLKSYYRCT 240 HHACNVKKQV QRLAKDTSVV VTTYEGVHNH PCEKLMEALN PILRQLQLLT QLGFRPAANA 300 VPAPDALASD PPSTPAPSLL RRRGCPRPDA LTVSVPIRPH PRLSLPPPFP APAAASTSIP 360 SCHRLNPSQI KAPERAPAGK PASISDKWLP PEKPGPFRAQ VKPCNREGTT PYSSPALAPS 420 LRSTGGRRTP SPSRPRKVSL LRRDHRGTSL ARKARALGAR EASAALICPL VRGLNKSLYP 480 CLSSPLLPSC MVRPFPCTTD ARPGWPA

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MMKEWTGRLS CIRAVVELWL LAWLLPHAVL TYDSSPHRAR LLERSARLPN AFHLPASSVF  60
PLTGTQSPSP MEDSLRGAHQ HQLSEFLALT STGAAPRPQE KQQGSSNVAA THLAPTGAVS  120
CSPLVDWTSL LLSSAPGLPQ SQKHAAAGAC EQENAGGGEG SSTVTTATAS GGGSSSCKEM  180
VKAGRKGGGR GKKKASRPRF AFQTRSESDV LDDGYRWRKY GQKAVKNSAS PRLKSYYRCT  240
HHACNVKKQV QRLAKDTSVV VTTYEGVHNH PCEKLMEALN PILRQLQLLT QLGFRPAANA  300
VPAPDALASD PPSTPAPSLL RRRGCPRPDA LTVSVPIRPH PRLSLPPPFP APAAASTSIP  360
SCHRLNPSQI KAPERAPAGK PASISDKWLP PEKPGPFRAQ VKPCNREGTT PYSSPALAPS  420
LRSTGGRRTP SPSRPRKVSL LRRDHRGTSL ARKARALGAR EASAALICPL VRGLNKSLYP  480
CLSSPLLPSC MVRPFPCTTD ARPGWPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	201	270	7	74	Probable WRKY transcription factor 4
2lex_A	2e-21	201	270	7	74	Probable WRKY transcription factor 4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP62585	2	2