PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02391.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 300aa MW: 31551.1 Da PI: 7.2602

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02391.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	94.5	1.2e-29	21	128	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......X CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......k 75 F+ k+y++++d++++ ++sw +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+Y + + ++ + Zmw_sc02391.1.g00140.1.sm.mk 21 FVAKTYRMVDDPATDGVVSWGADNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYVRALRLSARVV-RApngfrkvD 100 9********************************************************64433333322.2234444335 PP TTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkkse 103 ++ weF+h sF +g+++ll++i r++s+ Zmw_sc02391.1.g00140.1.sm.mk 101 PDRWEFAHVSFLRGQTHLLRHIVRRSSN 128 9**********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.7E-46	17	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.7E-35	17	125	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.35E-31	17	125	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.8E-12	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-26	21	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-12	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-12	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTSGVVVADA AAAAPVGVAP FVAKTYRMVD DPATDGVVSW GADNNSFVVA DPFAFSQTLL 60 PAHFKHSNFS SFVRQLNTYV RALRLSARVV RAPNGFRKVD PDRWEFAHVS FLRGQTHLLR 120 HIVRRSSNNN GGGGGGKRKD DGGGGGGTGE EDSAAAVAME VARLKREQRA IEDQVAAMWR 180 RVQETERRPK QMLAFLVKVA GDPQVLRRLL DSSSGGLDGG GAGHGLSASG SSDGAGAEIV 240 KRPRLLLDGD LAGRHAATGI YGAGDDDVDG FFAADDVGFG VGDSGFSPQY AFPVDSTSGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-22	12	127	20	131	Heat shock factor protein 1
5d5v_B	7e-22	12	127	20	131	Heat shock factor protein 1
5d5v_D	7e-22	12	127	20	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152657.1	1e-107	heat shock factor protein 1
Swissprot	Q6EUG4	5e-98	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A3L6EVM0	1e-106	A0A3L6EVM0_MAIZE; Heat stress transcription factor C-2a
STRING	GRMZM2G105348_P01	1e-107	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]