PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02383.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 428aa    MW: 46670 Da    PI: 11.4935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02383.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-18230279255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Zmw_sc02383.1.g00050.1.am.mk 230 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 279
                                   69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-28229287No hitNo description
SuperFamilySSF541711.11E-19230287IPR016177DNA-binding domain
PfamPF008471.1E-10230278IPR001471AP2/ERF domain
PROSITE profilePS5103220.692230287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32230287IPR001471AP2/ERF domain
SMARTSM003801.5E-36230293IPR001471AP2/ERF domain
PRINTSPR003671.1E-10231242IPR001471AP2/ERF domain
PRINTSPR003671.1E-10253269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MHAAEQLAAW LCTHSAADRP GIRPRSAKGS LLLNSEAMSI VLVVPVGARA PPCLHVTRED  60
KPAIRSPCGF DRSSPPRRDK RVFGAPPSQL WSRAAQAPDR QCTNDASVVR DGDGTNGEDR  120
EKDTVRCTRT GAGGRRAYQH HIGVRNRRCV QRLRSICCSS QGGSWSSCSS QCDRMSIQPN  180
ERERPVHQLL LGSAALLSLS RHKASCPAVT PSEQETRRLV SFPMVRPQQR YRGVRQRHWG  240
SWVSEIRHPL LKTRIWLGTF ETAEDAARAY DEAARIMCGP RVRTNFPGDA GPGADVASSF  300
LSPALVAKLH RFNLASRRSE QDIRGVIARD GASSMTVMEK GGFVCRPLPG RSLMEGGGVE  360
SRVGFSSSWH VPPHAPRPNH VAPLRLRATS SPPAARRQRP RSSKKYAALS IAAGKATGVA  420
AENMSGAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-15229287463ATERF1
3gcc_A6e-15229287463ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118