PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02377.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 263aa    MW: 29839.8 Da    PI: 8.3549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02377.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2241e-07148172123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dC+ s++rk++L+rH+ tH
  Zmw_sc02377.1.g00030.1.sm.mkhc 148 FNCPleDCPFSYKRKDHLNRHMLTH 172
                                     78**********************9 PP
2zf-C2H216.23.1e-05177202123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     ++C+   C++sFs k n++rH +  H
  Zmw_sc02377.1.g00030.1.sm.mkhc 177 FSCTvdGCDRSFSIKANMQRHVKEfH 202
                                     89999*****************9988 PP
3zf-C2H220.21.6e-06214238123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     ++C+   C+ksF+ +s Lk+H  +H
  Zmw_sc02377.1.g00030.1.sm.mkhc 214 FVCKeeGCNKSFKYSSKLKKHEESH 238
                                     89*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355157496IPR015880Zinc finger, C2H2-like
SMARTSM003551.4120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.448120147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-6121146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576678.8E-11132174No hitNo description
Gene3DG3DSA:3.30.160.604.2E-8147174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4148172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097148177IPR007087Zinc finger, C2H2
PfamPF000969.4E-6148172IPR007087Zinc finger, C2H2
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-8158206No hitNo description
Gene3DG3DSA:3.30.160.601.1E-9175203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219177207IPR007087Zinc finger, C2H2
SMARTSM003550.0028177202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-5211239No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8213239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.115214243IPR007087Zinc finger, C2H2
SMARTSM003550.0037214238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSLYIQLNSH REAISVFSRV TASGHRPDGF AVVGALSASS GVGDLGVGKV MCSADEFDGE  60
KKVGKTVCKD IRRYKCDFCD VVRSKKCLIQ GHMVEHHKDE LDKSEIYNSN GGKIVHEVEQ  120
RCLECGTCFQ KPAHLKQHMQ CHSQERLFNC PLEDCPFSYK RKDHLNRHML THQGKSFSCT  180
VDGCDRSFSI KANMQRHVKE FHEGGNTAKS KQQFVCKEEG CNKSFKYSSK LKKHEESHGR  240
LRGDRCAIAI TFQRWTEEES VDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-1612424719138PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-1612424719138PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.11e-105transcription factor IIIA-like isoform X1
TrEMBLA0A3L6QDW71e-126A0A3L6QDW7_PANMI; Zinc finger X-linked protein ZXDA-like isoform X1
STRINGPavir.J03392.1.p1e-100(Panicum virgatum)
STRINGSi020193m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6776722