PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02375.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 1187aa    MW: 127385 Da    PI: 10.4377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02375.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-06644666123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++Cg+ F r  nL+ H r+H
  Zmw_sc02375.1.g00060.1.am.mk 644 YVCEICGQGFQRDQNLQMHRRRH 666
                                   9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-5643666IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032644666IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635644666IPR007087Zinc finger, C2H2
PROSITE patternPS000280646666IPR007087Zinc finger, C2H2
SMARTSM00355110686716IPR015880Zinc finger, C2H2-like
SMARTSM00355230722749IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    Send to blast
MIDCCCGAEV YTTDHACMRS DRPGGLAWNN PQSERMTTAN GSIAGSHRYH NHFASIKRDQ  60
ACKPGQTLAL PGRSGITRGG ILWRASRTCV NPGEHPSLDR GERKPSNVCV TACNATAGPC  120
RPANSSEVDG RRGARPCTPR CLLSALSATQ TRIETAPASG QRRSADAGAR QRRVNAIDAC  180
GGGSAPPAPV RQPGRIAPVS LLPSLDPRSR CAAPRVRGAG RGGEARTALE IGAGGAVPLL  240
AACARPPSLV ESIGARCGCV RSQHGDEKAW GAATDLQPKA KRTQPNVQPS LRPCHTRPEE  300
KVPRQNTPGP AQHAPDPRKM HAQVQQASRL PPGLLPHQLR AACLRECMAP VRHRDHMKIA  360
SIDLPGINPT TRDDPVCAAA NSDNDKHQWA GVKESWRWPF PPRQLREREA RVCEAFSGGG  420
GKERCTSFSS PITAPSVATL KLSVVQGAYG HPAVMRPCTS VALRHWWPRR RGLTVRVPRV  480
CRSASRADQA VPFRLLTHAW AVPELGAAGN YYAWARSHLC QASRLIALGA KGGCTSGSVS  540
QLDERPRLVL ARFLPVGGEM TQALAGSFVA RSRKNYVPPM LGFCAPADGP PPDEATPEPF  600
RSLQIATTDA TTTTKKKRRP AGTPDPDAEV VSLSPRTLLE SDRYVCEICG QGFQRDQNLQ  660
MHRRRHKVPW KLLKRQAGEA ARKRVFVCPE PSCLHHDPAH ALGDLVGIKK HFRRKHSGHR  720
QWACARCSKA YAVHSDYKAH LKTCGTRGHS CDCGRVFSRK LDGFIGEPCN GRPPHQTAPA  780
PSPPSFRDVT IPEGGSSSAA LLCVRARVFV LAYPLALRLP RASAAYLPGR GRPHSFGLSG  840
SPARHTYCSL GSQPRARPET VESFIEHQDT CNAGRTRADL SPACGGGVAA AAGSLQQAPA  900
PVSLSLTASS TSPSSDIVIS RAAWPGPAMP SPTAATAAFH RFDQVPSPQT PPPPPEHRGG  960
GHNLELQLMP PSSSSTGRAS PSMTAYSGPP RSPAVLSQGK DAVMHLTLSI GGQFGGAAER  1020
GGVVLDAART TNKVEAREQL RQAMAEKAAA DEARAEAKRY LELAEQELAT AKRMRRQAQV  1080
ELSRAHALRE HAVRQVNATL LQITCLSCGH KFRARPPAAP MSAEGVYSYV TEGGDAEDEP  1140
ERTRQQLYMF VARLVVMLAS AAAEKRAKAR AQSWKKIQGF VRACAPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-14718765349Zinc finger protein JACKDAW
5b3h_F7e-14718765349Zinc finger protein JACKDAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614618KKKRR
2614619KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4502633