PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02355.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 454aa MW: 49662.1 Da PI: 9.8675 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 80 | 144 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ t + ++ g++W+v + + +++ +l++GW eF a+g+ +g fvv++++g ++ l+vk f++ Zmw_sc02355.1.g00040.1.sm.mk 80 AREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLAAHGIGVGWFVVLRHEG--GGALTVKSFDT 144 4567889999**********..99999**************************765..67789998886 PP | |||||||
2 | B3 | 40.7 | 4.4e-13 | 180 | 261 | 10 | 95 |
HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + + +++p kf++++ + +l ++ g+ W++ l +k ++++++++GW++F ++g+ egD+v+++++g Zmw_sc02355.1.g00040.1.sm.mk 180 S--TEKMIIPAKFLKHYvteeY-L-NIFCISILVSPLGKFWRIVL--EKDQSGVFFADGWSQFLTSHGISEGDIVLLRYEG 254 3..3458*******88877531.2.2333557889**********..****9****************************9 PP SSEE..EEE CS B3 87 rsefelvvk 95 ++ f ++k Zmw_sc02355.1.g00040.1.sm.mk 255 NMVF--RFK 261 9999..444 PP | |||||||
3 | B3 | 36.4 | 9.4e-12 | 388 | 442 | 32 | 85 |
--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 32 esktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 es t+tl++ +g rsW v + g+y l++GWk+F ++n+Lk+gD+++F ++ Zmw_sc02355.1.g00040.1.sm.mk 388 ESSTITLKTsINGaRSWPVCG-LTAANGSYHLGSGWKKFYEENKLKVGDICTFNVV 442 45588888844447*****98.5777778************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.041 | 38 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-10 | 81 | 144 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-11 | 83 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-12 | 83 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.91E-7 | 87 | 143 | No hit | No description |
PROSITE profile | PS50863 | 9.446 | 92 | 145 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-16 | 167 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-17 | 169 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.815 | 169 | 266 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.24E-12 | 170 | 263 | No hit | No description |
SMART | SM01019 | 7.1E-10 | 172 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 180 | 260 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-13 | 336 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.023 | 339 | 452 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-14 | 339 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-11 | 340 | 443 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.55E-8 | 352 | 439 | No hit | No description |
PROSITE profile | PS50863 | 10.673 | 388 | 454 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MASSGDPVAP ARIKQLKVLL PRSVHKMVST IAIAVEHGCQ CNITGTKLIS LPGFKRISEE 60 LAGCFDVDGA ASAGGGEDGA REATALVVSP FGKVWRVGVG RDGEGAFLGR GWAEFLAAHG 120 IGVGWFVVLR HEGGGALTVK SFDTSFCIKD FGAPAAVMAS RGRKQASCKP QFIRLIRKDS 180 TEKMIIPAKF LKHYVTEEYL NIFCISILVS PLGKFWRIVL EKDQSGVFFA DGWSQFLTSH 240 GISEGDIVLL RYEGNMVFRF KTFGLNGGQK DLKNQNTGVQ QRTDTAKLSE SPSPTRKRKS 300 SDESSSSEEN SRLKSCMKSL NKTSAQKQPD YQIGPPSWIT KEITTYMLEK ILSLPVKFCD 360 SIGFQKSCIT TLKVATNSTR SWQIGLTESS TITLKTSING ARSWPVCGLT AANGSYHLGS 420 GWKKFYEENK LKVGDICTFN VVKTLLWQVD IARQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 294 | 299 | TRKRKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977888.1 | 1e-170 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A1E5W9E3 | 1e-168 | A0A1E5W9E3_9POAL; Putative B3 domain-containing protein | ||||
TrEMBL | K3YCY5 | 1e-169 | K3YCY5_SETIT; Uncharacterized protein | ||||
STRING | Si012086m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |