PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02353.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 947aa    MW: 100076 Da    PI: 6.9674
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02353.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000816582219
                                  EETTTTEEESSHHHHHHH CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                                  +C++Cg+ F+++ +L  H
  Zmw_sc02353.1.g00020.1.am.mk 65 VCENCGEEFTSWKSLLDH 82
                                  6***************99 PP
2zf-C2H212.90.00034872894123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+Cp+C+++F++   L  H r+H
  Zmw_sc02353.1.g00020.1.am.mk 872 YECPHCHRVFPSGQALGGHKRSH 894
                                   99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552606484IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.2E-7232255No hitNo description
PfamPF139127.1E-9233257IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221233260IPR007087Zinc finger, C2H2
SMARTSM003550.13233255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-7337364No hitNo description
PfamPF139121.4E-12341365IPR007087Zinc finger, C2H2
SMARTSM003551.6342364IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995342364IPR007087Zinc finger, C2H2
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
SMARTSM003550.081620642IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743620647IPR007087Zinc finger, C2H2
SuperFamilySSF576677.95E-7621642No hitNo description
PROSITE patternPS000280622642IPR007087Zinc finger, C2H2
PfamPF139120.075622642IPR007087Zinc finger, C2H2
PfamPF139128.8E-8807831IPR007087Zinc finger, C2H2
SMARTSM00355110807827IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.95E-7867894No hitNo description
PROSITE profilePS5015710.118872894IPR007087Zinc finger, C2H2
PfamPF139122.6E-12872894IPR007087Zinc finger, C2H2
SMARTSM003550.0077872894IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280874894IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MRAHGVADDV LSADDDDEED NVFDDDGAGS FDGDSSSEQA SPSATTSKRM YTLRANPGRL  60
KSCRVCENCG EEFTSWKSLL DHGRCNNYED GDGGTDGSTR RSPPLLDEEE VVEEDMALAT  120
AGWSKGKRTR RTKMMVVGNG SVTEMTRLRA TSPSSEEEDL ANCLVMLSSS RSAQPPPAVS  180
DADQESCASA SKDVVDRNRL LVPQPISMMA PAVPQLKLVA PPQPASTVPR GLFECKACKK  240
VFTSHQALGG HRASHKKVKG CFAAKLESDR RERPQPVTAT PRENIKVVDA KTPSVHTANA  300
DGNTSTSGVV TATAAPETAV TQANEAPSMS AASPAKKKGK VHECSICHRV FMSGQALGGH  360
KRCHWLTTGS GDPITGAVSK FHPIVAQDHV MHAVCQQLTL GRPIFSAAHP SLDLNNVPTN  420
PSAAMKQAAE LNDSVLCLNA PASLYMPSWT AVHSNGINVN KAATSSRNVD EAGAAATEDE  480
ADSRNAKKRK ISDLKDMNMA GETSPWLQVG IGLSRQLTPL LTIPWTHART EHATAPPCLL  540
AWHDPAQLRR EAETAVASSS QTRAGDGRHE QVVPVVAPFV LSGALSLALA PPFSLLTIFA  600
PAESSARAPR ALSTLAMTKN TCKLCFRRFA SPRAMAGHMR SHSVAAPAAS AAAAAAATAA  660
AARQPISSAS SASTSFTTAD EDVGFRKPSS TYTLRENPKR SLRGAVRSSS DRESEAESTP  720
PRSKRPSPRA ARGEQEPLSS LSEADTPEED VALSLMKLSR DSWPSAAPME TDCSDDESDD  780
GYAPPTPPSP PPRPAPAPPV AEKRTQFQCV ACKKVFRSYQ ALGGHRASNV RGGRGGCCAP  840
PVNAPPLPQH HAPSPLPEQH GEEGVDAKQQ PYECPHCHRV FPSGQALGGH KRSHVCGAAA  900
AAAEQAVPAS TPPSPINNPG MIDLNVEPPS EEVELSAVSD PHFNPGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955118.10.0uncharacterized protein LOC101782881
TrEMBLA0A3L6P9H70.0A0A3L6P9H7_PANMI; Uncharacterized protein
STRINGSi019899m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262