PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc02286.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 701aa MW: 75256.9 Da PI: 8.4949

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02286.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	451	549	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++++kf vh++FGasnv+kll++l+e +reda++sl+yeA++r+rdPvyG+vgvi+ Zmw_sc02286.1.g00020.1.am.mk 451 PCAACKFLRRKCQPDCVFAPYFPPDNTQKFVHVHRVFGASNVTKLLNELQEFQREDAVNSLAYEADMRLRDPVYGCVGVIS 531 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq++l+ql++ela++k Zmw_sc02286.1.g00020.1.am.mk 532 VLQHNLRQLQQELARAKY 549 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	450	551	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-42	451	548	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MTVVTDRLGA LSDELIQSTT STNRPGERLA CPVVDRGGEI GHAQDDGRFS VAVPPAHPFM 60 AGGVNPAGDE ARHARAGQDD THTTHSFARR PGVGSFPRAP NSQDLSLPVH DQSIDRLPVC 120 AAIHRAEGRG VWETPSPWMM EPFRSSLAAG RKQGTVELKA RELRSRQQRK GGGGGPSARM 180 LGWREEEEEE EVMGRLEATC RAFILISTPE DDDDAECQPA GQGCRARRTE RRSTARASRQ 240 SHRPSNNFVV IPYRPPCLHI APIRAAHAAG VRAWGRVRRA STLVCPPTRK RAVEACGPRA 300 PDPEDDDGGK GVVARSHFLF LAPADMAADR TGRIGVTNSY SMARVRAPSL PPERDPDRSI 360 MHHLLLFLLR ARAFNLHCGL VQSDVLRPGW LNAPGRLLAH ILSTVHGREP DRSQMASSSA 420 SSMPTPSGSL ITVAASSTSA AAAAVCGTGS PCAACKFLRR KCQPDCVFAP YFPPDNTQKF 480 VHVHRVFGAS NVTKLLNELQ EFQREDAVNS LAYEADMRLR DPVYGCVGVI SVLQHNLRQL 540 QQELARAKYE LSKYQVIDSL IIHLASIYAP DRFILITLTV ADLLRFLVQQ AAAAAAAANA 600 STGPNGPQPM AEFIGNGMPN GGHNFINIGH SPALGSIGVF GQDHFANAQM LSRNYDGGYE 660 FGYPATMGGN GGPASSLGSL GVNSFLKSGT AGGDDKPSAG Q

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MTVVTDRLGA LSDELIQSTT STNRPGERLA CPVVDRGGEI GHAQDDGRFS VAVPPAHPFM  60
AGGVNPAGDE ARHARAGQDD THTTHSFARR PGVGSFPRAP NSQDLSLPVH DQSIDRLPVC  120
AAIHRAEGRG VWETPSPWMM EPFRSSLAAG RKQGTVELKA RELRSRQQRK GGGGGPSARM  180
LGWREEEEEE EVMGRLEATC RAFILISTPE DDDDAECQPA GQGCRARRTE RRSTARASRQ  240
SHRPSNNFVV IPYRPPCLHI APIRAAHAAG VRAWGRVRRA STLVCPPTRK RAVEACGPRA  300
PDPEDDDGGK GVVARSHFLF LAPADMAADR TGRIGVTNSY SMARVRAPSL PPERDPDRSI  360
MHHLLLFLLR ARAFNLHCGL VQSDVLRPGW LNAPGRLLAH ILSTVHGREP DRSQMASSSA  420
SSMPTPSGSL ITVAASSTSA AAAAVCGTGS PCAACKFLRR KCQPDCVFAP YFPPDNTQKF  480
VHVHRVFGAS NVTKLLNELQ EFQREDAVNS LAYEADMRLR DPVYGCVGVI SVLQHNLRQL  540
QQELARAKYE LSKYQVIDSL IIHLASIYAP DRFILITLTV ADLLRFLVQQ AAAAAAAANA  600
STGPNGPQPM AEFIGNGMPN GGHNFINIGH SPALGSIGVF GQDHFANAQM LSRNYDGGYE  660
FGYPATMGGN GGPASSLGSL GVNSFLKSGT AGGDDKPSAG Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	447	554	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	447	554	7	114	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95