PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 555aa MW: 60449.4 Da PI: 6.8783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02285.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.8	1.2e-54	149	278	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ + e++ewyfFs +d+ky+tg+r+nrat Zmw_sc02285.1.g00080.1.am.mk 149 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQEhcgIGYDEQNEWYFFSYKDRKYPTGTRTNRAT 228 69**************************.9***********953432234677****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+Wkatg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle Zmw_sc02285.1.g00080.1.am.mk 229 MAGFWKATGRDKAVHD-KSRLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 278 ************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-57	146	287	IPR003441	NAC domain
PROSITE profile	PS51005	56.488	149	336	IPR003441	NAC domain
Pfam	PF02365	3.5E-28	150	277	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-57	324	336	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MVSFCAMEFL DQATERSEAV QATETHLLLV LPGFSLAILP RPVHARHAFV APLDGGDGGP 60 VVAFPLLPAA PPALSKVLNY HARRPACMQL SKVVQARALP PPAARQKLAN AISFCYLHYL 120 QGSGVAESDA HTYSGAAPGD HMDSMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV 180 IRDIDLYRIE PWDLQEHCGI GYDEQNEWYF FSYKDRKYPT GTRTNRATMA GFWKATGRDK 240 AVHDKSRLIG MRKTLVFYKG RAPNGQKTDW IMHEYRLETD ENAPPQARSL APLLVIYLLV 300 SGSVNVLARA ISRFTPNKLV VVLQEEGWVV CRAFKKRTAY PARSMALAWD SSFAYRDPNV 360 MVGATAAEAA AFVDPNEAYA QIRRQSSKNA RFKQEAELDG AAAFLQYSSH LVELPQLESP 420 SAPLAPNTSH ASTEEGGSGG GRRSKKARAD KVATDWRALD KFVASQLSPG EGGDIEATAS 480 AAAAGEGSQL DHGCEEDMAA LLFLNSDGRE EVERWTGLLG PASAPVATCD PSLLTNFVVG 540 PSPAGGAADL RRGRD

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MVSFCAMEFL DQATERSEAV QATETHLLLV LPGFSLAILP RPVHARHAFV APLDGGDGGP  60
VVAFPLLPAA PPALSKVLNY HARRPACMQL SKVVQARALP PPAARQKLAN AISFCYLHYL  120
QGSGVAESDA HTYSGAAPGD HMDSMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV  180
IRDIDLYRIE PWDLQEHCGI GYDEQNEWYF FSYKDRKYPT GTRTNRATMA GFWKATGRDK  240
AVHDKSRLIG MRKTLVFYKG RAPNGQKTDW IMHEYRLETD ENAPPQARSL APLLVIYLLV  300
SGSVNVLARA ISRFTPNKLV VVLQEEGWVV CRAFKKRTAY PARSMALAWD SSFAYRDPNV  360
MVGATAAEAA AFVDPNEAYA QIRRQSSKNA RFKQEAELDG AAAFLQYSSH LVELPQLESP  420
SAPLAPNTSH ASTEEGGSGG GRRSKKARAD KVATDWRALD KFVASQLSPG EGGDIEATAS  480
AAAAGEGSQL DHGCEEDMAA LLFLNSDGRE EVERWTGLLG PASAPVATCD PSLLTNFVVG  540
PSPAGGAADL RRGRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-46	146	277	12	140	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678630.1	0.0	NAC domain-containing protein 37 isoform X1
Swissprot	Q9SL41	1e-114	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A368SWG2	0.0	A0A368SWG2_SETIT; Uncharacterized protein
STRING	Pavir.Ib00161.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3625	37	68

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]