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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02280.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 444aa MW: 49585.8 Da PI: 4.1304 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.2 | 2.9e-48 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhPtd el ++yLk+k+ gk+l + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nra Zmw_sc02280.1.g00100.1.am.mkhc 6 LPPGFRFHPTDVELCSYYLKRKIMGKSLIV-DAIAEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRA 83 79*************************988.89**************96347777888********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t +gyWk++gkd+ ++ +++ vg kktL+f++g+apkg +tdWvm ey++ Zmw_sc02280.1.g00100.1.am.mkhc 84 TPNGYWKTSGKDRIIML-NSRSVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 133 *****************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.3 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELC SYYLKRKIMG KSLIVDAIAE VELYKFAPWD LPDKSCLRSR 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIIML NSRSVGSKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDDYLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAE 180 GETSMFHLMP SSEVVNPVED SHVQQATPAG AIEEPILQHS SAACAREELS CDITAVAENM 240 TFGNAVAGSD IQDGLVSENN DSDEVNNFCD APEFDALLLE ELSQFLNDSP HENSFGGNSA 300 LPPMSEAEAH AFEVNTLDFY NELSGLCEFD DMPNNFYTGD DGTMEHTTLP VDRELSADEF 360 VELNDLLASD PSFPFELPAQ NNQYLQFPLA QYTYNGHHND ITAPPASFEP SCSLPTNSSI 420 FDMFPPANNS DFATDQATNF QTQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660428.1 | 0.0 | NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 9e-80 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A368QI29 | 0.0 | A0A368QI29_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J02083.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Publications ? help Back to Top | |||
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