PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02268.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 654aa    MW: 69417.8 Da    PI: 8.9858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02268.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0587109123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zmw_sc02268.1.g00180.1.am.mk  87 FVCEVCSKGFQREQNLQLHRRGH 109
                                   89*******************88 PP
2zf-C2H211.50.00091164186123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zmw_sc02268.1.g00180.1.am.mk 164 WKCDKCSKRYAVQSDWKAHSKIC 186
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-786109No hitNo description
PROSITE profilePS5015711.03287109IPR007087Zinc finger, C2H2
SMARTSM003550.008687109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355150129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-7159184No hitNo description
SMARTSM00355140164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MASNSSAAAV AALLGIRDGD HHEQMKPLLA QPHQQSHVAP LNIGASSSAG SGQATAVPPL  60
PFQARSVHPD AEVIALTPKT LMATNRFVCE VCSKGFQREQ NLQLHRRGHN LPWKLKQKDP  120
AQAQRRRVYT CPEPTCAHHD PARALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKICGTRE YRCDCGTLFS RYKARSTDDG AAERYNLHSY GEVKRCPRPE ASRPLPACIG  240
AIRWPCQRAR GPAASITSFR SKQRKDLHAP TTLAHWRDSF ITHRAFCDAL AQESARLPTP  300
GLTAGHLYGA TGAANMALSL SQVGSHLAST LGADVHGHHQ DLLRLGGVSG ATRLDHLLGP  360
SGAVAFRTMP PPPGSAFLMG APQEFGGDGD VTGSQVFLQG KPFHGLMNLP DLQGNGAGGQ  420
PASGLFNHGY IASSANSSGT SSHGHPSHGH MTSDQFSEGG RGGGGGGGSE SSAAVLFNAC  480
RNFSGGDHQV APGRMYNEQA MVLPRMSATA LLQKASQMGS STSAHGSASV FRGLVDSSVP  540
SDPQGRASMV DQSQMHLQSL MNSLAGGGMF GSANSGNMID PRLYDMDDQD VKFSQQDRGG  600
IEMTRDFLGV GGSGVMRGMP VARGEQHDGA DDMSSLEAEM KSASSSFTGG SRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-21160201344Zinc finger protein JACKDAW
5b3h_F2e-21160201344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458466GGRGGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.20.0INDETERMINATE-related protein 10
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGPavir.J10227.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798