PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02244.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 42715.6 Da PI: 5.9043 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 197 | 243 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Zmw_sc02244.1.g00090.1.sm.mkhc 197 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 243 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.022 | 194 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-11 | 197 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 198 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 198 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.27E-5 | 207 | 246 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.8E-5 | 281 | 328 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MGGHGNRHRH QEVGVLVDDE GEELEQHGGR ACGGATSGVV EQGVGDGGRG LEAAGMVFEA 60 SSSVGSVSAT MASSQILGWP PPEQPPQQPI HHHHSIGGGQ SPFFPLLPPQ PPHPPPPFFA 120 DFYARRALQF AYDHSGGGPS SSSDPLGLGG LYMGHHHGGS PVSGMMMPPP FGSSPFGDFG 180 RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA SLLAEVIQHV 240 KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRPDL LPDLIRALKA 300 LRLRALKAEI TTLGGRVKNV LFVTGDDSAG CPGGDGDDEQ QDQPQAPMSP QHTVASIQDA 360 LRAVMERTAS LAAEEPGAAS SGGGLKRQRT TSLSAILENS ASHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 207 | ERRRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649780.1 | 1e-175 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 2e-77 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1E5UY76 | 0.0 | A0A1E5UY76_9POAL; Transcription factor bHLH30 | ||||
STRING | OB03G21490.1 | 1e-175 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Publications ? help Back to Top | |||
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