PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02239.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 341aa MW: 37472.8 Da PI: 6.1923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02239.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	120	167	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Zmw_sc02239.1.g00110.1.am.mk 120 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 167 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.95E-11	114	171	No hit	No description
SuperFamily	SSF47459	3.53E-17	114	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-16	116	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.656	116	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	120	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-10	122	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MASFSRLPQQ MEHGHTNASH SMPSYLFSHG ADSAIPEDAS METSSVVLDT SPQRAASVDK 60 KRKLSEDGAS LSSAHSKVDS KEETKKRGGK RERNRKEMDE DEAPKGYIHV RARRGQATDS 120 HSLAERVRRE RISERMRVLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL 180 SPVLYGFGMD SDAFIDHAQK IEGLLHQEAF AIPASVLTRA PPQAIMDTNT SNSPASHEVH 240 GDGCMSFYQV RLLFRSIYLV AIQDSVPEHC DNDHEADLPE FRTMAATWCK QWSASRPRDT 300 GMELGVGDAT AAATVSSLRP GPAGYDVEWS SNARAADTAD V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803717.1	1e-129	transcription factor bHLH137-like
TrEMBL	A0A2S3H1M2	1e-128	A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EUH4	1e-128	A0A2T7EUH4_9POAL; Uncharacterized protein
STRING	Pavir.J05063.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91