PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02231.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 564aa    MW: 59316.6 Da    PI: 8.4584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02231.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-052345123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+k F r  nL+ H r H
  Zmw_sc02231.1.g00030.1.am.mk 23 FVCEVCNKGFQREQNLQLHRRGH 45
                                  89*******************88 PP
2zf-C2H213.10.0002899121123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zmw_sc02231.1.g00030.1.am.mk  99 WKCDKCNKRYAVQSDWKAHSKTC 121
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-72245No hitNo description
Gene3DG3DSA:3.30.160.607.7E-62245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00412345IPR015880Zinc finger, C2H2-like
PfamPF121713.7E-52345IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0942345IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-587120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-794119No hitNo description
SMARTSM0035511099119IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDLNPDAEVI ALSPKTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPMETR  60
RKVYLCPEPT CVHHEPSRAL GDLTGIKKHY CRKHGEKKWK CDKCNKRYAV QSDWKAHSKT  120
CGTREYRCDC GTLFSRPAGK VASCCYLCPC RASLRLSCLD IPPGFPWPES SQSQYHTCSS  180
SILFMASSSS SSPASCDSEM LLLFLCFCLY RIWRDSFITH RAFCDALAQE SARVPPIGAG  240
MYGSGGMALG LSGMAASQLQ SAFQQDHAHS SGVTAMTGNA AAQFEHLMPS SAGPPAFRGA  300
QPTSSSSSPF YLGGGEDCHQ GQAGHTSLLH GKPTFHGLMQ LPEQQGSNGL LNLGFFSGAT  360
SGQDARLVLP DQFNGSAPPN GRGDGGEHGN SSASHESAAI FPGSLMANQM GGVAGFSSLY  420
NNSSETVAPP QMSATALLQK AAQMGATTSG GGGGCVNSLL RGLNSGGASN GRPGGAAGFM  480
AGQSSSSRST SQAENESQLR DMVNGLAASG NGAFSSGFPG VDDGKLSTRD FLGVGGRNVN  540
GAAGHQLRHG AAGIGMGSLD PKMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-2195137345Zinc finger protein JACKDAW
5b3h_F6e-2195137345Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649012.10.0uncharacterized protein LOC542697 isoform X6
TrEMBLA0A3L6PM370.0A0A3L6PM37_PANMI; INDETERMINATE-related protein 1
STRINGPavir.Fb02381.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320