PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02221.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 294aa    MW: 32193.4 Da    PI: 7.8555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02221.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1798148155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++y+GVr++  +grW+AeIrdp+    + +r +lg++ taeeAa+a+++a+++++g
  Zmw_sc02221.1.g00020.1.sm.mkhc  98 KKYRGVRYRA-SGRWAAEIRDPR----QgRRAWLGTYCTAEEAARAYDRAARRIRG 148
                                     59******99.7*********94....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-1798156No hitNo description
SMARTSM003802.1E-3299162IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2199157IPR016177DNA-binding domain
PfamPF008472.1E-1199148IPR001471AP2/ERF domain
PROSITE profilePS5103222.66999156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2899156IPR001471AP2/ERF domain
PRINTSPR003674.0E-7100111IPR001471AP2/ERF domain
PRINTSPR003674.0E-7122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MCGGAILSDL TPSRVHRRLT AATLWPETQR ITTRSTTAGG KRKADDGDLT DEFEAEFQLF  60
EDDDGEEEES LAPLLAGASV PSRPNKKPRV AAGPERGKKY RGVRYRASGR WAAEIRDPRQ  120
GRRAWLGTYC TAEEAARAYD RAARRIRGKS ARLNFPLPHE GHRRAPVIDL NLPAASDDTI  180
TMDVDAASSG DICHPVMGGA EAMAITLMRV KELVTHQGPH DELLASAVSE LTNGAATVCS  240
EARAIGASRY AALICECNRQ MEQIAALKRD LERHEGQLLA RREKLVRMIS PALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1896157264ATERF1
3gcc_A4e-1896157264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.15e-95ethylene-responsive transcription factor RAP2-12
TrEMBLK4ADI11e-93K4ADI1_SETIT; Uncharacterized protein
STRINGSi036647m2e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229