PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02186.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 617aa    MW: 67494.6 Da    PI: 4.9933
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02186.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.55.5e-2695202187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......................rergferspkqCkekwenln 58 
                                   rW+++e+laLi++r+em+ ++r++ lk+plWe+v++ +                       ++ g+ rs+k+Ckek+en+ 
  Zmw_sc02186.1.g00080.1.am.mk  95 RWPREETLALIRIRSEMDAAFRNAPLKAPLWEDVASEVvgvvqddkdlrarqpydtawaklAALGYVRSAKKCKEKFENVD 175
                                   8******************************************************************************** PP

                      trihelix  59 krykkikegekkrtsessstcpyfdqlea 87 
                                   k+y+++ke + +r++++s  +++f++lea
  Zmw_sc02186.1.g00080.1.am.mk 176 KYYRRTKEARAGRQDGKS--YRFFSELEA 202
                                   ************866665..******985 PP
2trihelix106.91.3e-33379464187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k+ev+aLi++r+e++e+  ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpy
  Zmw_sc02186.1.g00080.1.am.mk 379 RWPKEEVQALIRLRTEKDEQCHDTGSKGPLWEDIAAEMRRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PQDSKTCPY 458
                                   8********************************************************************97.9******** PP

                      trihelix  82 fdqlea 87 
                                   f+ql+a
  Zmw_sc02186.1.g00080.1.am.mk 459 FHQLDA 464
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.992177IPR001005SANT/Myb domain
PfamPF138374.0E-1594203No hitNo description
PROSITE profilePS500905.2595175IPR017877Myb-like domain
CDDcd122034.34E-2195182No hitNo description
SMARTSM007179.7E-6376438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-5377435IPR009057Homeodomain-like
PfamPF138372.6E-22378465No hitNo description
PROSITE profilePS500908.049378436IPR017877Myb-like domain
SuperFamilySSF466891.45E-5378448IPR009057Homeodomain-like
CDDcd122033.25E-27379443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLHHHGGARF PYAAPGTTDA VQFSFPPPPT DPESFTTIPQ PPAPAETSVF AELPFAGSGS  60
GVVAASNLHE DDDTPADFGV SGTGASGASG SGSTRWPREE TLALIRIRSE MDAAFRNAPL  120
KAPLWEDVAS EVVGVVQDDK DLRARQPYDT AWAKLAALGY VRSAKKCKEK FENVDKYYRR  180
TKEARAGRQD GKSYRFFSEL EALHAAAPQQ RRQQASGQAD PQPSAPMSWT TAPAALAPPG  240
AGLPELSFSS MSGSESESDD DEFDVDGAED HGKGDGDATV CDKEMMALFE GMMRQVTEKQ  300
DAMQRVFLDT LERWEAERTA REEAWRRQEV ARMNREREQL AKERAXXXSP LQVVSVPSKP  360
EESWAWAGGE SSGGSTSSRW PKEEVQALIR LRTEKDEQCH DTGSKGPLWE DIAAEMRRIG  420
YNRSAKRCKE KWENINKYFK KVKESNKRRP QDSKTCPYFH QLDAMYRKKR FAGRPGSGAA  480
SEAHLSTVTA SSQTSPSQRE LEGKSSNDAG KQNIIGAANI HALPSEMASA ATILGDGAKN  540
KKPEDTETET NMQLQQQHEF AADETDSDDM VMEGLYTDEG NDGDRMQYKT GSSGNTPAPT  600
ETAAAATSSA STFLAVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ391172e-96TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0A9DG780.0A0A0A9DG78_ARUDO; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175