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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02180.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 263aa MW: 27240.9 Da PI: 11.2102 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.7e-30 | 193 | 251 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs+fpr+YYrC+ gCp++k+ver+a+dp ++++tYeg+H+h+ Zmw_sc02180.1.g00070.1.am.mk 193 SDEHSWRKYGQKPIKGSPFPRGYYRCSAVkGCPARKHVERDASDPATLVVTYEGDHRHD 251 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.2E-5 | 153 | 186 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-31 | 179 | 252 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.515 | 187 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 188 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-35 | 192 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 194 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKDPGGILSR PRIHPIPTSK SRRPTQHPPR GPATSRSPSP PATAELRMAV DLMGERLAFR 60 EAAAAGLRSL ELLASSLSPR TAAPVGEIAG QAKPAPAAAT STSFLSSVTA AGGGEGSVSK 120 GQSLLAGVSS GKPPLPKRKH PCPGAVAPSP AAEATTAARP ATCHCSGKRR RKHLTTRTVR 180 VPASSRASTD VPSDEHSWRK YGQKPIKGSP FPRGYYRCSA VKGCPARKHV ERDASDPATL 240 VVTYEGDHRH DSAAAAAAPQ AVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 187 | 251 | 12 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 187 | 251 | 12 | 75 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972520.1 | 6e-57 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 6e-46 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | B4FEI8 | 1e-59 | B4FEI8_MAIZE; Uncharacterized protein | ||||
STRING | Sb07g006980.1 | 1e-58 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |