PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02169.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 949aa    MW: 103725 Da    PI: 6.9853
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02169.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.89.3e-16789825945
                                   HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF   9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                                   ++vtfskR+ gi+KKA+E+   Cd++vav+ifs+ gk
  Zmw_sc02169.1.g00130.1.am.mk 789 NEVTFSKRKSGIFKKASEIILRCDTRVAVVIFSKAGK 825
                                   68********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517357.82E-36999IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7204.4E-341299IPR016040NAD(P)-binding domain
PfamPF163632.2E-91587IPR016040NAD(P)-binding domain
SuperFamilySSF517357.82E-36142404IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7204.4E-34142403IPR016040NAD(P)-binding domain
SuperFamilySSF517351.74E-44422748IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7201.3E-42425746IPR016040NAD(P)-binding domain
PfamPF013706.3E-17426681IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
CDDcd089581.79E-102426734No hitNo description
SMARTSM004321.1E-8763832IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-15789839IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.82790833IPR002100Transcription factor, MADS-box
PfamPF003196.1E-15790827IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-6795810IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-6810831IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MEEERNSGNG VKVCVTGGAG FIGSWLVKKL LQRGYTVHAT LRDVGDEAKA GLVRQLVPGA  60
AESGRLALFE ADLYDASTFA PAIAACRFVF LVATPFQHDA TSSKVISSRP SGLLIQHGLG  120
NQFLSPISCL RSHRILLHLV ATQYKSTAEA VVDSARVILR QCVASQTVQR VIYVGSMSAS  180
SPLKADSTGF KDAIDESCWT PLDVDYPHRN EQFHVRSAPN IIHSRAYVRD QLRMRSAYSP  240
VIIYQEYTQS KLLSEKEFLA YNESESPAFE VVTVPCAVVT GDTLQDQGHA TEALECAASP  300
VTRDELRFGA LRTLQRLLGS VPLVHVDDVC DALVFCMERP SMAGRFLCAA AYPTLDEIVS  360
HFANKYPHLD ILKETEVLPS VQAHSDKLGE MGFRYKYGMG EILDGSVQCA EASMAEEGRT  420
SNGVRVCVTG GAGFIGSWLV RKLLERGYTV HATLRNKGEK EKAGLLRRLV PGATERLQLF  480
EADLFDAATF APAIAGCQFV FLVATPFGLE SASSKYKSTA EAAVDAVRAI LRQCAESKTV  540
KRVIHTASIS TASPLKEPPG AGYRDFISES CWTSLDVDYP LRSAHFDKYI LSKLQSEHEL  600
LRHNDGDHPA FDVVTLALGL VAGDTVLGHV PETLQHAVSP VSGNEFGFAF LRLLQRLLGS  660
VALVHVDDVC EALVFCAERP SPTAGRFLCA AAYPTIHDVV EHYAKRFPHL DVLKETETVA  720
RVQPAVDKLG ELGFKYKCGL EEILDCSVAC AARLGCIDAA MLSARQRHAY HQRGYSGSWP  780
TGHFRRDPNE VTFSKRKSGI FKKASEIILR CDTRVAVVIF SKAGKPYALG SPSVDDVLRL  840
VDVHADGAPA QQLSSDVVCE RGVPAQQVTA VADRAAAEAM VRQLEDTKAL VAAEQLRVRT  900
VGDRVMQAAA GRRFWWEADV EKLGAAELPE FTRALQQLRD SLHRHIERV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2c29_D1e-46137533322DIHYDROFLAVONOL 4-REDUCTASE
2c29_F1e-46137533322DIHYDROFLAVONOL 4-REDUCTASE
2iod_A1e-46137533322Dihydroflavonol 4-reductase
2iod_B1e-46137533322Dihydroflavonol 4-reductase
2iod_C1e-46137533322Dihydroflavonol 4-reductase
2iod_D1e-46137533322Dihydroflavonol 4-reductase
2nnl_D1e-46137533322Dihydroflavonol 4-reductase
2nnl_F1e-46137533322Dihydroflavonol 4-reductase
3bxx_A1e-46137533322dihydroflavonol 4-reductase
3bxx_B1e-46137533322dihydroflavonol 4-reductase
3bxx_C1e-46137533322dihydroflavonol 4-reductase
3bxx_D1e-46137533322dihydroflavonol 4-reductase
3bxx_E1e-46137533322dihydroflavonol 4-reductase
3bxx_F1e-46137533322dihydroflavonol 4-reductase
3c1t_A1e-46137533322dihydroflavonol 4-reductase
3c1t_B1e-46137533322dihydroflavonol 4-reductase
3c1t_C1e-46137533322dihydroflavonol 4-reductase
3c1t_D1e-46137533322dihydroflavonol 4-reductase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444518.10.0putative anthocyanidin reductase
RefseqXP_004965714.10.0putative anthocyanidin reductase
TrEMBLA0A0E0E4H90.0A0A0E0E4H9_9ORYZ; Uncharacterized protein
STRINGLPERR06G19120.10.0(Leersia perrieri)