PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02164.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 634aa    MW: 67446.2 Da    PI: 6.4657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02164.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.4e-911915861373
                          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvs..elykalppsetse 71 
                                   l +lL+++Aea+s   ++ ela+ +L rl+e++s +g       +m+Rlaa+ft AL+  l +s +    +k  ++ + ++
  Zmw_sc02164.1.g00090.1.am.mk 191 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTGAtnapasNMERLAAHFTDALQGLLDGSHPvgAASKHAATAAPHQ 271
                                   579**********8557777***************9965888889*****************9666213445555666666 PP

                          GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                   ++  ++l+a+++++++sP++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp   +pp+lRiT+v ++
  Zmw_sc02164.1.g00090.1.am.mk 272 HHRGDVLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdgVPPPHLRITAVLRN 352
                                   6699*************************************************************777799*********8 PP

                          GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                     g +++++e+g+rLa fA++++ pf+f     ++ + ++  + r+ +gEal+ n+vl+          ++    ++L  +
  Zmw_sc02164.1.g00090.1.am.mk 353 GGGGARAVQEVGRRLAAFAASIRQPFSFGQCRIDSEDRFRSATVRMVKGEALVANCVLNQAAATTTVRRSTGSVASFLAGM 433
                                   888***************************9999999*********************887776555555557999***** PP

                          GRAS 232 kslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                    +l +k+v+vve++  d ++e           F++rf+e l+ ysa+ dslea++p++s  r  vEr++l+++i  +v+ +
  Zmw_sc02164.1.g00090.1.am.mk 434 ATLGAKLVTVVEEDrGDAEKEddeggdaaagGFVARFMEELHRYSAVCDSLEAGFPTQSWVRGLVERVILAPNIAGAVSRA 514
                                   *************953333335678889999************************************************** PP

                          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                                    ++   + e  + W e+++  GF++vpls ++ +qa+lll  ++ dgy++ee s + +vlgWk r+L+s+S+W
  Zmw_sc02164.1.g00090.1.am.mk 515 YRAVDGDGEARGGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKARRLLSASVW 586
                                   ********************************************.******88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.084165567IPR005202Transcription factor GRAS
PfamPF035148.5E-89191586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MPSISLIHRA SAVALGSRRR SGSRGLSSIN KPLSCVLPSS PQIPAPSLPT DRSPLSPRAK  60
TFPDSKPKQS HSTRTGINQA STMEVTMDDV AGELEFSGCS STTTSCSHEA WNSLSPVAEW  120
GPFCRDDCGQ DLHGLIEAML CDGTLVGAAV DDDYDSIHPA SVPSSTTTTN PGTPVYDVDA  180
QGDCPEKGLR LLHLLMAAAE ALSGPHKSRE LARVILVRLK EMVSHTGATN APASNMERLA  240
AHFTDALQGL LDGSHPVGAA SKHAATAAPH QHHRGDVLTA FQMLQDMSPY MKFGHFTANQ  300
AILEAVAGDR RVHVVDYDIA EGVQWASLMQ AMISRPDGVP PPHLRITAVL RNGGGGARAV  360
QEVGRRLAAF AASIRQPFSF GQCRIDSEDR FRSATVRMVK GEALVANCVL NQAAATTTVR  420
RSTGSVASFL AGMATLGAKL VTVVEEDRGD AEKEDDEGGD AAAGGFVARF MEELHRYSAV  480
CDSLEAGFPT QSWVRGLVER VILAPNIAGA VSRAYRAVDG DGEARGGWGE WMRGNGFRAV  540
PLSCFNHSQA RLLLGLFNDG YTMEETSPNK IVLGWKARRL LSASVWAPPP MSVPSSPPEG  600
VLQSVVMAPV SGGVGRMEFD YIDSFLAEPA YALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4819958826379Protein SCARECROW
5b3h_D1e-4819958826379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468140.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-148NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1E5V8410.0A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRINGSb01g040270.10.0(Sorghum bicolor)
STRINGGRMZM2G055263_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]