PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02138.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 373aa    MW: 40634.7 Da    PI: 5.8687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02138.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.4e-07126148123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cgk F+r  nL+ H+r H
  Zmw_sc02138.1.g00190.1.sm.mk 126 HTCKVCGKGFKRDANLRMHMRGH 148
                                   79*******************98 PP
2zf-C2H210.60.0018222245123
                                   EEETTTT.EEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                   y+C  C+ k+Fs   +L++H + +
  Zmw_sc02138.1.g00190.1.sm.mk 222 YVCRRCNvKRFSVLADLRTHEKHC 245
                                   9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.31E-6124151No hitNo description
SMARTSM003550.0011126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321126153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-6126151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SMARTSM0035541184217IPR015880Zinc finger, C2H2-like
SMARTSM0035528222244IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
METGSLESAM EAQQEHTQTA GPGSGDPTTV LTFLEKKIGY LRGIFGSASR QVVSAELSCI  60
AAQLLSISQS LAATASDEDG PVHVKSPPPC ADSESSDDHD VVPPPAWSAY EVIQLEEREI  120
LAPHVHTCKV CGKGFKRDAN LRMHMRGHGE EYKTAAALAK PPAVVRRDVA PQSTPDATAA  180
RCLYSCPYVG CKRNREHKSF QPLKTAVCVK NHYRRSHCDK RYVCRRCNVK RFSVLADLRT  240
HEKHCGRDRW ICSCGTSFSR KDKLFGHVAA FDGHAPALPP DDEDLTNQCT AANDIGSDQI  300
DAEAISRMAS MDCFSDTSIF DEFNCSDMEG FPLPLADGPC LDDGRGFLSP IGIDSCSFEG  360
FGLFGPPGLE LEF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794847.11e-158zinc finger protein STOP1 homolog
SwissprotQ943I67e-93STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3L6SDL01e-159A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGPavir.Ia00191.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]