PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02128.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 24598.9 Da PI: 10.3742 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.3 | 0.00016 | 190 | 209 | 12 | 31 |
HHHHHHHHHHHHHCTSCCC. CS HLH 12 RRdriNsafeeLrellPkas 31 RR++iN ++e L+el+P ++ Zmw_sc02128.1.g00150.1.am.mk 190 RREKINARMELLKELVPGCM 209 9****************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-4 | 170 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRHTSPPPPQ EFPVSGAEIQ ALIPASAAGP SSLSTTTASA GGGGGTRASF TALLGLPTSQ 60 AMELLLPRVA PAPAPAFPTD PHLVDRAAHF SAFASPAPSS PSPITTPPPP PPPPAPSATN 120 AKRKADPADR SSKGKAAKKG KTAVDENKPA GGDGEDEKPA YVHVRARRGQ ATDSHSLAER 180 VSSPPLLFAR REKINARMEL LKELVPGCMH LASPGEGMGF ASRLWLSGQN VAAALKVAGD 240 G |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347160.1 | 3e-54 | uncharacterized protein LOC100273300 | ||||
Swissprot | Q8VZ02 | 2e-25 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A3L6PCD5 | 1e-54 | A0A3L6PCD5_PANMI; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G378653_P02 | 2e-57 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP62070 | 2 | 2 |
Publications ? help Back to Top | |||
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