PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02128.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 625aa MW: 67063.6 Da PI: 8.3524

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02128.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	510	532	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Zmw_sc02128.1.g00070.1.am.mk 510 FMCRKCGKAFAVRGDWRTHEKNC 532 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	494	530	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-6	496	530	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	510	530	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MGDRYTNFLR GYYPHLAPPS NPPPASSTSI FSSYATSYLH PPPPSPPIRE ALPLLSNLTP 60 PSTTTQPQHH DDVQDQKDRC KLMSLISSCS NSAGVQEATA DQAEEVTVAL HIGLPSPSPS 120 ESAAMAAGSG AENQEPAAER QGSQQRDDGG GDEDEGEDAM VVGCASIGIG RLTKGQYWIP 180 TPSQILIGPT HVCCGVDLRG GSAAAAAAVA VRVCLQASIA NLISLSLSLS RSLCDPVYGV 240 HHFFDLIEPS RSRGTEACSN GGRGERPLTW GRTLYSYGGL PHTTNPTTSS GLQSAQSIRS 300 DPSEASKKGG AVEQSWSLCN IKPFAPIPRY LEHVKRATPL TPLELSSSSL LHQQPPVPDT 360 PLHLLQQHLA TRYAHVGARF AVPQGPRVAA RHAADSDAPA AVLLLRGGVP EQHRPPAGAA 420 PQGLPHAADA LPPEARHQAL HVPQVRQGLR RARRLAHPRE ELXXXAMLRL PCYCCAAGCR 480 NNIDHPRARP LKDFRTLQTH YRRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCTC 540 GSDFKHKRSL KDHIRAFGRG HAACGIDCFD DLDDDDRDPS SEVDHAATTS ASTATVVAAV 600 AGANACNNHR GMPSTSRGSG NRRTL

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MGDRYTNFLR GYYPHLAPPS NPPPASSTSI FSSYATSYLH PPPPSPPIRE ALPLLSNLTP  60
PSTTTQPQHH DDVQDQKDRC KLMSLISSCS NSAGVQEATA DQAEEVTVAL HIGLPSPSPS  120
ESAAMAAGSG AENQEPAAER QGSQQRDDGG GDEDEGEDAM VVGCASIGIG RLTKGQYWIP  180
TPSQILIGPT HVCCGVDLRG GSAAAAAAVA VRVCLQASIA NLISLSLSLS RSLCDPVYGV  240
HHFFDLIEPS RSRGTEACSN GGRGERPLTW GRTLYSYGGL PHTTNPTTSS GLQSAQSIRS  300
DPSEASKKGG AVEQSWSLCN IKPFAPIPRY LEHVKRATPL TPLELSSSSL LHQQPPVPDT  360
PLHLLQQHLA TRYAHVGARF AVPQGPRVAA RHAADSDAPA AVLLLRGGVP EQHRPPAGAA  420
PQGLPHAADA LPPEARHQAL HVPQVRQGLR RARRLAHPRE ELXXXAMLRL PCYCCAAGCR  480
NNIDHPRARP LKDFRTLQTH YRRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCTC  540
GSDFKHKRSL KDHIRAFGRG HAACGIDCFD DLDDDDRDPS SEVDHAATTS ASTATVVAAV  600
AGANACNNHR GMPSTSRGSG NRRTL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227506.1	7e-78	zinc finger protein WIP2
Swissprot	Q9SVY1	3e-66	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	I1GXB8	2e-76	I1GXB8_BRADI; Uncharacterized protein
STRING	BRADI1G36067.1	3e-77	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15363	5	11

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]