PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02121.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 577aa    MW: 62182.2 Da    PI: 9.5298
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02121.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP23.81.2e-07278299122
                                   --SSTT-----TT--HHHHHTT CS
                           SBP   1 lCqvegCeadlseakeyhrrhk 22 
                                   +Cq+egC+adls ak+yhrrhk
  Zmw_sc02121.1.g00020.1.am.mk 278 RCQAEGCKADLSGAKHYHRRHK 299
                                   6********************9 PP
2SBP46.11.3e-143994274977
                                   EEETTT--SS--S-STTTT-------S-- CS
                           SBP  49 fhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   fh l+efDe+krsCr+rLa+hn+rrrk++
  Zmw_sc02121.1.g00020.1.am.mk 399 FHVLTEFDEAKRSCRKRLAEHNRRRRKPA 427
                                   ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-6271308IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.853276426IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-11277308IPR004333Transcription factor, SBP-box
PfamPF031107.9E-8398425IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.11E-10398428IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MYRTTPLFLS PKQPWRDLLH RRSKACDEAS SSDAEPCHSW TSYMPRVNTN GHTPTKAAAR  60
RGRASPARSL PFSCSGLAPN VSSVHHHTLH WDAASEFSSI TSYIDRPAMM SGRLNAVTSV  120
AGNDFAFAPS MQQPPYLGFD HGVEGGGGSG IGQRAMQNHL YESLDFAAAA AMQFQEAPHH  180
QLLTLPSSLA PMAPPPPLPM PLQMPIPMPG MHGDMYPALG MVKREGGGAE GGRIGLNLGR  240
RTYFSPGDML AVDRLLMRSR LGGVFGLGFG GAHHQPPRCQ AEGCKADLSG AKHYHRRHKQ  300
RFCQQCSRSV TSQLARSFSL SSLVGSCGAM LLVRVPYLLR ALRPWPKAAA SPLDARGDLA  360
VPPEFGSPVV QPPLAAAIWG PDCPNLLACF TLIPALTGFH VLTEFDEAKR SCRKRLAEHN  420
RRRRKPAAAA DGGTSSAAKK LNSGAITSSY TTDNKNLTST TKSTMSSNPS SVISYLDQGK  480
QARPTLTLGA SQDKDQQQQL STMLQVQSSG HRHQDQQHFI SSLQVHHQSS NNNNMLSCSS  540
ACSSALPSAN GELSDQTNNS NTGNGNNSVH LFEVDFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408425KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.15e-65squamosa promoter-binding-like protein 10
SwissprotA2YFT93e-45SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE83e-45SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
STRINGSi006559m2e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593