PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02117.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 308aa    MW: 33020.6 Da    PI: 7.7817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02117.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.24.4e-18114201186
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75 
                                     +Wt+  +  L++a++++ e+l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s++
  Zmw_sc02117.1.g00020.1.sm.mkhc 114 EWTDGAIGSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTSGVKSVEQCKNKIDNLKKRYKVECQRLAG--SGA 190
                                     5*************************************7765333445799***************99999998..688 PP

                        trihelix  76 sstcpyfdqle 86 
                                     +s++p+f+++e
  Zmw_sc02117.1.g00020.1.sm.mkhc 191 TSHWPWFRKME 201
                                     889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-21112203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MASCDDDFGL LADDAHPTPP PQPPTVQQPA PQLCFADAAA AASATTGPFV PAQEESNHHA  60
ERDKAAPSGK RGREEFNSDG GEYSSYINSS GVGGKKGRGG GGGGSSDYRK DREEWTDGAI  120
GSLLDAYTDR FEQLNRGNLR GRDWEDVAAA VTDGQGKTSG VKSVEQCKNK IDNLKKRYKV  180
ECQRLAGSGA TSHWPWFRKM EQIVGNSASP ASSKPLVTSD DDKARQMPQH SSKRYTVSCA  240
APPNVVGASR GNPFSNPRWK RVLLKIGGTA LAGEAPQNVD HKVDICSLLS SLTCWSLVTS  300
PERFVEIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKKGRGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668441.11e-122uncharacterized protein LOC100383551 isoform X1
TrEMBLA0A3L6PXU11e-121A0A3L6PXU1_PANMI; Uncharacterized protein
STRINGGRMZM2G002978_P021e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442