PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zmw_sc02087.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 31592.6 Da PI: 4.3582

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02087.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	39	82	13	56
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Zmw_sc02087.1.g00150.1.am.mkhc 39 HLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 82 67*****************************************9 PP
2	HD-ZIP_I/II	119.6	1.6e-38	37	119	10	92
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 v+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++Lr Zmw_sc02087.1.g00150.1.am.mkhc 37 GVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLR 115 6899*************************************************************************** PP HD-ZIP_I/II 89 eelk 92 +++ Zmw_sc02087.1.g00150.1.am.mkhc 116 SQVV 119 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.0E-13	32	88	IPR001356	Homeobox domain
CDD	cd00086	9.14E-17	38	85	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-19	38	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.76E-17	38	86	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-15	39	82	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.888	41	84	IPR001356	Homeobox domain
PRINTS	PR00031	1.7E-6	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-6	64	80	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.4E-18	84	126	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDSGRLIFNT TGSGAAQMLF LDCGVGGPAG GSLFHRGVHL LEKSFEEENK LEPERKTELA 60 RKLGLQPRQV AVWFQNRRAR WKTKQLERDF DRLKASFDAL RADHDALLQD NHRLRSQVVS 120 LTEKLQEKEE GGVGAAADTT EFTADVKQAS LAVDPEKTAA EVAFDAQQVK SEDRLSTGSG 180 GSAVVDTDAL LAAVDSSVES YFPGGDGHYT DCGMGPVDYP CAAEFQSEED DGAGSDEGCS 240 YCPDDNAAAA ALFVGHAHHH VDDDKDDGEL WMWNLACGHA FFCSADGSSE VPC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813024.1	1e-118	homeobox-leucine zipper protein HOX16-like isoform X1
Swissprot	Q6YWR4	4e-99	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A2S3GT38	1e-117	A0A2S3GT38_9POAL; Uncharacterized protein
STRING	Pavir.Ab02950.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]