PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02051.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 368aa    MW: 41701.3 Da    PI: 8.6975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02051.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.6e-07163187123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dC+ s++rk++L+rH+ tH
  Zmw_sc02051.1.g00040.1.am.mkhc 163 FNCPleDCPFSYKRKDHLNRHMLTH 187
                                     78**********************9 PP
2zf-C2H215.64.7e-05192217123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     ++C+   C++sFs k n++rH +  H
  Zmw_sc02051.1.g00040.1.am.mkhc 192 FSCTvdGCDRSFSIKANMQRHVKEfH 217
                                     899999****************9988 PP
3zf-C2H219.62.5e-06229253123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     ++C+   C+ksF+ +s Lk+H  +H
  Zmw_sc02051.1.g00040.1.am.mkhc 229 FVCKeeGCNKSFKYSSKLKKHEESH 253
                                     89*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261135162IPR007087Zinc finger, C2H2
SMARTSM003551.3135157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-6136161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-10147189No hitNo description
Gene3DG3DSA:3.30.160.606.9E-8162189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.5E-5163187IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4163187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097163192IPR007087Zinc finger, C2H2
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-8173221No hitNo description
Gene3DG3DSA:3.30.160.601.7E-9190218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219192222IPR007087Zinc finger, C2H2
SMARTSM003550.0028192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-8224253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-5226254No hitNo description
PROSITE profilePS5015710.72229253IPR007087Zinc finger, C2H2
SMARTSM003550.0037229253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231253IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5262301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.98E-5262301No hitNo description
SMARTSM003556279305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSLYIQLNSH REAISVFSHV TASGHRPDGF AVVGALSASS GVGDLGVGKV VHGLIFRRGL  60
HHEVVMCSAD EFDGEKKVGK TVCKDIRRYK CDFCDVVRSK KCLIQAHMVE HHKDELDKSE  120
IYNSNGGKIV HEVEQRCLEC GVCFQKPAHL KQHMQCHSQE RLFNCPLEDC PFSYKRKDHL  180
NRHMLTHQGK SFSCTVDGCD RSFSIKANMQ RHVKEFHEGG NTAKSKQQFV CKEEGCNKSF  240
KYSSKLKKHE ESHVKLDYVE VKSNMTKHMK ACHDQLKPFP CRFAGCDKAF TYKHVRDNHE  300
QSSAHGDFEE IDAQLQSRSR GGRKRKALTV ETLTRKRVTI SSEPSATDNG VEYLRWLLSG  360
GDGSSQNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1813930419160PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1813930419160PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.11e-155transcription factor IIIA-like isoform X1
SwissprotQ84MZ44e-48TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A3L6QDW71e-179A0A3L6QDW7_PANMI; Zinc finger X-linked protein ZXDA-like isoform X1
STRINGSi020193m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882