PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02037.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 302aa    MW: 32956.9 Da    PI: 8.8361
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02037.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.93.7e-2524110186
                      trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                                   rWt++e+l+Li+arr me+r  + + +  p+W++vs+++r++g+er+p qC+++w nl+++ k+i ++e+k +++++ ++ 
  Zmw_sc02037.1.g00120.1.sm.mk  24 RWTRHETLVLIQARRAMERRGLQqTVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKRIVAWEGKAAAGAVPQHE 104
                                   8*****************9987615688********************************************999999999 PP

                      trihelix  81 yfdqle 86 
                                    f +++
  Zmw_sc02037.1.g00120.1.sm.mk 105 SFWDMR 110
                                   999995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1311782IPR017877Myb-like domain
SuperFamilySSF466896.82E-521107IPR009057Homeodomain-like
PfamPF138372.7E-112495No hitNo description
Gene3DG3DSA:1.10.10.602.4E-42481IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSTNEKSPPA EAAAASTPRS RLPRWTRHET LVLIQARRAM ERRGLQQTVR PRPKWAAVSA  60
YCRRHGVERG PMQCRKRWGN LSWDLKRIVA WEGKAAAGAV PQHESFWDMR GEERRARQLP  120
SSFDREVYNA IVAGTAAVVE DAAAAVLPDF GEEMDGAYEQ PPIMVVPISA RRYEPPPASS  180
EHECSNPVDT HFGATTAATE SEKKKVGGAA SDKNSTSQQD AGGGPKDSDA TFVAGAEDTG  240
TPAATVSIGK QVIEALERGN RALMQHLEVQ RTNRDADRQQ RTALLVALDR LGDAVARIAD  300
KL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819294.11e-148trihelix transcription factor ASR3-like
TrEMBLA0A2S3HNF51e-147A0A2S3HNF5_9POAL; Uncharacterized protein
STRINGPavir.Ea03865.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224